https://github.com/tprodanov/locityper

Targeted genotyper for complex polymorphic genes
https://github.com/tprodanov/locityper

bioinformatics genomics structural-variation

Last synced: 5 months ago
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Targeted genotyper for complex polymorphic genes

• Host: GitHub
• URL: https://github.com/tprodanov/locityper
• Owner: tprodanov
• License: mit
• Created: 2022-12-20T10:48:29.000Z (over 3 years ago)
• Default Branch: main
• Last Pushed: 2026-01-23T13:25:49.000Z (5 months ago)
• Last Synced: 2026-01-24T05:33:43.349Z (5 months ago)
• Topics: bioinformatics, genomics, structural-variation
• Language: Rust
• Homepage: https://locityper.vercel.app
• Size: 1.62 MB
• Stars: 31
• Watchers: 1
• Forks: 2
• Open Issues: 9
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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Locityper




[![Last updated](https://img.shields.io/github/last-commit/tprodanov/locityper/main.svg?label=Last%20updated&color=blue&style=flat-square)](https://github.com/tprodanov/locityper/commits/main/)

[![Last release](https://img.shields.io/github/v/tag/tprodanov/locityper.svg?label=GitHub&color=blueviolet&style=flat-square)](https://github.com/tprodanov/locityper/releases)

[![Bioconda](https://img.shields.io/conda/v/bioconda/locityper.svg?label=Bioconda&color=blue&style=flat-square)](https://anaconda.org/bioconda/locityper)



Locityper is targeted genotyper for polymorphic genes based on short- and long-read whole genome sequencing.

Locityper is created by

[Timofey Prodanov](https://marschall-lab.github.io/people/tprodanov/) `timofey.prodanov[at]hhu.de` and

[Tobias Marschall](https://marschall-lab.github.io/people/tmarschall/) `tobias.marschall[at]hhu.de`

at the [Marschall Lab](https://marschall-lab.github.io/),

[Heinrich Heine University Düsseldorf](https://hhu.de).

Please find installation instructions, test dataset and other information at [locityper.vercel.app](https://locityper.vercel.app).

Additional scripts for benchmarking can be found at [github.com/tprodanov/locityper-bench](https://github.com/tprodanov/locityper-bench).