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https://github.com/trias-project/checklist-recipe
Template repository for standardizing thematic species checklist data to Darwin Core using R
https://github.com/trias-project/checklist-recipe
darwin-core gbif oscibio r rstats
Last synced: 3 months ago
JSON representation
Template repository for standardizing thematic species checklist data to Darwin Core using R
- Host: GitHub
- URL: https://github.com/trias-project/checklist-recipe
- Owner: trias-project
- License: mit
- Created: 2018-06-29T12:11:11.000Z (over 6 years ago)
- Default Branch: main
- Last Pushed: 2022-04-14T16:17:14.000Z (over 2 years ago)
- Last Synced: 2024-04-29T12:33:57.256Z (7 months ago)
- Topics: darwin-core, gbif, oscibio, r, rstats
- Homepage: https://github.com/trias-project/checklist-recipe/wiki
- Size: 3.22 MB
- Stars: 18
- Watchers: 9
- Forks: 12
- Open Issues: 1
-
Metadata Files:
- Readme: README.md
- License: LICENSE
Awesome Lists containing this project
- jimsghstars - trias-project/checklist-recipe - Template repository for standardizing thematic species checklist data to Darwin Core using R (Others)
README
# Checklist recipe
> 👩🏻🍳 This is a template repository for **standardizing thematic species checklist data to Darwin Core using R**. As a result, the rest of the README is a template as well. To use this repository for your own checklist data, [read the recipe](https://github.com/trias-project/checklist-recipe/wiki). Happy cooking!
## Rationale
This repository contains the functionality to standardize the data of to a [Darwin Core Archive](https://www.gbif.org/darwin-core) that can be harvested by [GBIF](https://www.gbif.org/).
## Workflow
[source data](data/raw) → Darwin Core [mapping script](src/dwc_mapping.Rmd) → generated [Darwin Core files](data/processed)
## Published dataset
* [Dataset on the IPT]()
* [Dataset on GBIF]()
## Repo structure
The repository structure is based on [Cookiecutter Data Science](http://drivendata.github.io/cookiecutter-data-science/) and the [Checklist recipe](https://github.com/trias-project/checklist-recipe). Files and directories indicated with `GENERATED` should not be edited manually.
```
├── README.md : Description of this repository
├── LICENSE : Repository license
├── checklist-recipe.Rproj : RStudio project file
├── .gitignore : Files and directories to be ignored by git
│
├── src
│ ├── dwc_mapping.Rmd : Darwin Core mapping script
│ ├── _site.yml : Settings to build website in docs/
│ └── index.Rmd : Template for website homepage
│
├── docs : Repository website GENERATED
│
└── data
├── raw : Source data, input for mapping script
└── processed : Darwin Core output of mapping script GENERATED
```
## Installation
1. Click on `Use this template` to create a new repository on your account
2. Open the RStudio project file
3. Open the `dwc_mapping.Rmd` [R Markdown file](https://rmarkdown.rstudio.com/) in RStudio
4. Install any required packages
5. Click `Run > Run All` to generate the processed data
6. Alternatively, click `Build > Build website` to generate the processed data and build the website in `docs/` (advanced)
## Contributors
[List of contributors]()
## License
[MIT License](LICENSE) for the code and documentation in this repository. The included data is released under another license.