https://github.com/trinityrnaseq/trinityrnaseq

Trinity RNA-Seq de novo transcriptome assembly
https://github.com/trinityrnaseq/trinityrnaseq

Last synced: 11 months ago
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Trinity RNA-Seq de novo transcriptome assembly

• Host: GitHub
• URL: https://github.com/trinityrnaseq/trinityrnaseq
• Owner: trinityrnaseq
• License: bsd-3-clause
• Created: 2014-08-07T21:22:53.000Z (over 11 years ago)
• Default Branch: master
• Last Pushed: 2024-05-17T12:00:24.000Z (almost 2 years ago)
• Last Synced: 2024-05-17T13:26:38.669Z (almost 2 years ago)
• Language: Perl
• Size: 270 MB
• Stars: 807
• Watchers: 56
• Forks: 320
• Open Issues: 268
• Metadata Files:
  • Readme: README
  • Changelog: Changelog.txt
  • License: LICENSE

Awesome Lists containing this project

• Awesome-Bioinformatics-Benchmarks - Trinity - ABySS](https://github.com/bcgsc/transabyss) were typically among the best. For assembly evaluation, the authors recommend a hybrid approach combining both biological-based (BUSCO, # of full length transcripts) and reference-free metric (e.g. `TransRate`, `DETONATE`). (RNA-seq / _de novo_ Assembly and Quantification)

README

          
All documentation for Trinity is provided at the Trinity website:

http://trinityrnaseq.github.io