Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
https://github.com/trinityrnaseq/trinityrnaseq
Trinity RNA-Seq de novo transcriptome assembly
https://github.com/trinityrnaseq/trinityrnaseq
Last synced: 26 days ago
JSON representation
Trinity RNA-Seq de novo transcriptome assembly
- Host: GitHub
- URL: https://github.com/trinityrnaseq/trinityrnaseq
- Owner: trinityrnaseq
- License: bsd-3-clause
- Created: 2014-08-07T21:22:53.000Z (over 10 years ago)
- Default Branch: master
- Last Pushed: 2024-05-17T12:00:24.000Z (7 months ago)
- Last Synced: 2024-05-17T13:26:38.669Z (7 months ago)
- Language: Perl
- Size: 270 MB
- Stars: 807
- Watchers: 56
- Forks: 320
- Open Issues: 268
-
Metadata Files:
- Readme: README
- Changelog: Changelog.txt
- License: LICENSE
Awesome Lists containing this project
- Awesome-Bioinformatics-Benchmarks - Trinity - ABySS](https://github.com/bcgsc/transabyss) were typically among the best. For assembly evaluation, the authors recommend a hybrid approach combining both biological-based (BUSCO, # of full length transcripts) and reference-free metric (e.g. `TransRate`, `DETONATE`). (RNA-seq / _de novo_ Assembly and Quantification)
README
All documentation for Trinity is provided at the Trinity website:
http://trinityrnaseq.github.io