https://github.com/tripal/tripal_analysis_interpro

This module extends the Tripal Analysis Module and provides a method for loading XML results from the InterProScan program. The module can load InterProScan XML v4 or InterProScan XML v5 generated from the command-line or web-based versions of InterProScan. Additionally, GO terms mapped by InterProScan can optionally be assigned to features.
https://github.com/tripal/tripal_analysis_interpro

analysis interproscan-xml loader tripal

Last synced: about 1 month ago
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This module extends the Tripal Analysis Module and provides a method for loading XML results from the InterProScan program. The module can load InterProScan XML v4 or InterProScan XML v5 generated from the command-line or web-based versions of InterProScan. Additionally, GO terms mapped by InterProScan can optionally be assigned to features.

• Host: GitHub
• URL: https://github.com/tripal/tripal_analysis_interpro
• Owner: tripal
• License: gpl-3.0
• Created: 2016-02-11T20:04:27.000Z (over 9 years ago)
• Default Branch: 7.x-3.x
• Last Pushed: 2022-07-26T20:11:11.000Z (almost 3 years ago)
• Last Synced: 2025-03-21T06:33:25.923Z (about 2 months ago)
• Topics: analysis, interproscan-xml, loader, tripal
• Language: PHP
• Size: 201 KB
• Stars: 1
• Watchers: 8
• Forks: 5
• Open Issues: 2
• Metadata Files:
  • Readme: README.md
  • License: LICENSE.txt

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This module provides a method for loading XML results from the InterProScan program and make those results visible on gene or transcript content types in [Tripal](http://tripal.info). The module can load InterProScan XML v4 or InterProScan XML v5 generated from the command-line or web-based versions of InterProScan. Additionally, GO terms mapped by InterProScan can optionally be assigned to features.

# Installation

Instructions for installation and usage are currently found in the [Tripal v3 User's Guide](https://tripal.readthedocs.io/en/latest/user_guide/example_genomics.html).