https://github.com/tsmbland/pde-rk

Functions for simulating one-dimensional PDE models using an adaptive Runge-Kutta scheme
https://github.com/tsmbland/pde-rk

pde-solver python

Last synced: 25 days ago
JSON representation

Functions for simulating one-dimensional PDE models using an adaptive Runge-Kutta scheme

• Host: GitHub
• URL: https://github.com/tsmbland/pde-rk
• Owner: tsmbland
• License: cc-by-4.0
• Created: 2018-07-26T12:46:13.000Z (over 6 years ago)
• Default Branch: master
• Last Pushed: 2023-08-13T11:11:57.000Z (over 1 year ago)
• Last Synced: 2024-12-06T02:47:46.112Z (about 1 month ago)
• Topics: pde-solver, python
• Language: Python
• Homepage: https://pde-rk.readthedocs.io/
• Size: 114 MB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

Awesome Lists containing this project

README

        
# pde-rk

[![CC BY 4.0][cc-by-shield]][cc-by]

[![Black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/psf/black)

[![pre-commit](https://img.shields.io/badge/pre--commit-enabled-brightgreen?logo=pre-commit&logoColor=white)](https://github.com/pre-commit/pre-commit)

[![PyPi version](https://badgen.net/pypi/v/pde-rk/)](https://pypi.org/project/pde-rk)

[![Documentation Status](https://readthedocs.org/projects/pde-rk/badge/?version=latest)](https://pde-rk.readthedocs.io/en/latest/?badge=latest)

Functions for simulating PDE models with an adaptive Runge-Kutta scheme

## Installation

    pip install pde-rk

## Instructions

The repository contains an example notebook that demonstrates the method using the PAR polarity model (Goehring et al., 2011).

To run the notebook in Colab, click here: 



  

## Publications

This package has been used in the following publications: 

Illukkumbura, R., Hirani, N., Borrego-Pinto, J., Bland, T., Ng, K., Hubatsch, L., McQuade, J., Endres, R.G., and Goehring, N.W. (2023). [Design principles for selective polarization of PAR proteins by cortical flows](https://rupress.org/jcb/article/222/8/e202209111/214138/Design-principles-for-selective-polarization-of). Journal of Cell Biology.

Illukkumbura, Bland, T. and Goehring, N.W. (2020). [Patterning and polarization of cells by intracellular flows](https://www.sciencedirect.com/science/article/abs/pii/S0955067419300924?via=ihub). Current Opinion in Cell Biology.

_To add your paper to this list, please use the issues form, or create a pull request_

## License

This work is licensed under a

[Creative Commons Attribution 4.0 International License][cc-by].

[![CC BY 4.0][cc-by-image]][cc-by]

[cc-by]: http://creativecommons.org/licenses/by/4.0/

[cc-by-image]: https://i.creativecommons.org/l/by/4.0/88x31.png

[cc-by-shield]: https://img.shields.io/badge/License-CC%20BY%204.0-lightgrey.svg