https://github.com/turbot/powerpipe-mod-rnacentral
Visualize RNAcentral chemical components, database insights, and sequence behaviors, and more using Powerpipe and PostgreSQL.
https://github.com/turbot/powerpipe-mod-rnacentral
dashboard postgres postgresql powerpipe powerpipe-mod rnacentral sql
Last synced: 2 months ago
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Visualize RNAcentral chemical components, database insights, and sequence behaviors, and more using Powerpipe and PostgreSQL.
- Host: GitHub
- URL: https://github.com/turbot/powerpipe-mod-rnacentral
- Owner: turbot
- License: apache-2.0
- Created: 2024-02-13T04:39:26.000Z (over 2 years ago)
- Default Branch: main
- Last Pushed: 2024-03-06T16:25:40.000Z (over 2 years ago)
- Last Synced: 2025-01-01T16:24:52.684Z (over 1 year ago)
- Topics: dashboard, postgres, postgresql, powerpipe, powerpipe-mod, rnacentral, sql
- Language: HCL
- Homepage: https://hub.powerpipe.io/mods/turbot/rnacentral
- Size: 301 KB
- Stars: 3
- Watchers: 8
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- Changelog: CHANGELOG.md
- License: LICENSE
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README
# RNAcentral Mod for Powerpipe
View dashboards to analyze [RNAcentral](https://rnacentral.org/) chemical components, database insights, and sequence behaviors, and more.
## Overview
Dashboards can help answer questions like:
- How many chemical components are present in the RNAcentral database?
- What is the total count of databases contributing their data to RNAcentral?
- Which databases have the highest number of sequences?
- How are RNA modifications distributed across different types?
- What are the trends in RNA interactions as classified by taxonomic IDs?
## Documentation
- **[Dashboards →](https://hub.powerpipe.io/mods/turbot/rnacentral/dashboards)**
## Getting Started
### Installation
Download and install Powerpipe (https://powerpipe.io/downloads). Or use Brew:
```sh
brew install turbot/tap/powerpipe
```
Install the mod:
```sh
mkdir dashboards
cd dashboards
powerpipe mod init
powerpipe mod install github.com/turbot/powerpipe-mod-rnacentral
```
### Browsing Dashboards
Start the dashboard server with the [public RNAcentral Postgres database](https://rnacentral.org/help/public-database) connection string:
```sh
powerpipe server --database postgres://reader:NWDMCE5xdipIjRrp@hh-pgsql-public.ebi.ac.uk:5432/pfmegrnargs
```
Browse and view your dashboards at **http://localhost:9033**.
## Open Source & Contributing
This repository is published under the [Apache 2.0 license](https://www.apache.org/licenses/LICENSE-2.0). Please see our [code of conduct](https://github.com/turbot/.github/blob/main/CODE_OF_CONDUCT.md). We look forward to collaborating with you!
[Powerpipe](https://powerpipe.io) is a product produced from this open source software, exclusively by [Turbot HQ, Inc](https://turbot.com). It is distributed under our commercial terms. Others are allowed to make their own distribution of the software, but cannot use any of the Turbot trademarks, cloud services, etc. You can learn more in our [Open Source FAQ](https://turbot.com/open-source).
## Get Involved
**[Join #powerpipe on Slack →](https://powerpipe.io/community/join)**
Want to help but not sure where to start? Pick up one of the `help wanted` issues:
- [Powerpipe](https://github.com/turbot/powerpipe/labels/help%20wanted)
- [RNAcentral Mod](https://github.com/turbot/powerpipe-mod-rnacentral/labels/help%20wanted)