https://github.com/twlab/methylcrf
https://github.com/twlab/methylcrf
Last synced: 3 days ago
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- Host: GitHub
- URL: https://github.com/twlab/methylcrf
- Owner: twlab
- Created: 2016-09-12T21:03:37.000Z (almost 10 years ago)
- Default Branch: master
- Last Pushed: 2018-11-20T19:47:09.000Z (over 7 years ago)
- Last Synced: 2024-10-30T10:52:05.046Z (over 1 year ago)
- Language: C++
- Size: 860 KB
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
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Metadata Files:
- Readme: README.md
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README
# methylCRF 1.2
Because of bedtools requirement, please make sure all the bed files used for the tool has been sorted using `sort -k1,1V -k2,2n`
## 1.2 update:
* sort bedfiles before mapBed
## 1.1 update:
* Replace olapBed with mapBed in bedtools
* Fix a compiling error of crfasgd on mac
## about this tool:
* Estimate genome wide methylation level at each CpG sites using MeDIP-seq and MRE-seq data. Please read [methylcrf website](methylcrf.wustl.edu) for more information.
* Publication: [Stevens_GenomeResearch2013](http://genome.cshlp.org/content/23/9/1541.abstract)
## How to install:
* step1: install bedtools.
* step2: make
Enjoy!