https://github.com/tylerdougan/waltlabtools

A collection of tools for biomedical research assay analysis in Python.
https://github.com/tylerdougan/waltlabtools

assay biomedical-data-science calibration-curve concentrations curve-fitting diagnostics elisa modeling numpy python

Last synced: about 1 month ago
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A collection of tools for biomedical research assay analysis in Python.

• Host: GitHub
• URL: https://github.com/tylerdougan/waltlabtools
• Owner: tylerdougan
• License: gpl-3.0
• Created: 2021-07-02T21:36:34.000Z (over 3 years ago)
• Default Branch: main
• Last Pushed: 2024-06-23T20:10:03.000Z (5 months ago)
• Last Synced: 2024-10-01T16:16:46.271Z (about 2 months ago)
• Topics: assay, biomedical-data-science, calibration-curve, concentrations, curve-fitting, diagnostics, elisa, modeling, numpy, python
• Language: Python
• Homepage: https://waltlabtools.readthedocs.io
• Size: 7.47 MB
• Stars: 2
• Watchers: 2
• Forks: 2
• Open Issues: 0
• Metadata Files:
  • Readme: README.rst
  • Changelog: changelog.md
  • License: LICENSE

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README

        
waltlabtools

============

.. image:: https://img.shields.io/conda/vn/tylerdougan/waltlabtools?label=Anaconda

   :target: https://anaconda.org/tylerdougan/waltlabtools

   :alt: Anaconda

.. image:: https://img.shields.io/pypi/v/waltlabtools?label=PyPI

   :target: https://pypi.org/project/waltlabtools

   :alt: PyPI

.. image:: https://img.shields.io/readthedocs/waltlabtools?label=Documentation

   :target: https://waltlabtools.readthedocs.io/en/latest/

   :alt: Documentation

.. image:: https://img.shields.io/github/issues/tylerdougan/waltlabtools?label=GitHub

   :target: https://github.com/tylerdougan/waltlabtools

   :alt: GitHub

A collection of tools for biomedical research assay analysis in Python.

Key Features

------------

-  Analysis for assays such as

   `digital ELISA `__,

   including single-molecule array (Simoa) assays

-  Read instrument-generated files and calculate calibration curves,

   concentrations, limits of detection, and more

-  Free and open-source software under the

   `GNU General Public License v3 `__

Getting Started

---------------

Installation

^^^^^^^^^^^^

You can install waltlabtools using

`Anaconda `__ (recommended) or

`PyPI `__. If you're not comfortable

with the command line, begin by installing

`Anaconda Navigator `__. Then follow

`these instructions `__

to add the channel ``tylerdougan``, and install waltlabtools from this channel.

Alternatively, install waltlabtools from the command line with

``conda install -c tylerdougan waltlabtools`` (recommended; requires you to

first install Anaconda or

`Miniconda `__) or

``pip install waltlabtools`` (requires

`pip `__, which should come

with Python).

Usage

^^^^^

.. code-block:: python

   

   import waltlabtools as wlt  # waltlabtools main functionality

-----

Development of waltlabtools is led by the

`Walt Lab `__ for Advanced Diagnostics

at `Brigham and Women's Hospital `__,

`Harvard Medical School `__, and the

`Wyss Institute for Biologically Inspired Engineering `__.