https://github.com/uhlerlab/conditional_independence

Parametric and non-parametric conditional independence testing.
https://github.com/uhlerlab/conditional_independence

statistics

Last synced: 2 months ago
JSON representation

Parametric and non-parametric conditional independence testing.

• Host: GitHub
• URL: https://github.com/uhlerlab/conditional_independence
• Owner: uhlerlab
• License: other
• Created: 2021-01-29T19:46:01.000Z (almost 4 years ago)
• Default Branch: main
• Last Pushed: 2021-02-08T03:40:42.000Z (almost 4 years ago)
• Last Synced: 2024-08-03T15:05:50.150Z (6 months ago)
• Topics: statistics
• Language: HTML
• Homepage:
• Size: 6 MB
• Stars: 10
• Watchers: 4
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE.txt

Awesome Lists containing this project

README

        
[![PyPI version](https://badge.fury.io/py/conditional_independence.svg)](https://badge.fury.io/py/conditional_independence)

[![Build Status](https://travis-ci.com/uhlerlab/conditional_independence.svg?branch=main)](https://travis-ci.com/uhlerlab/conditional_independence)

[![codecov](https://codecov.io/gh/uhlerlab/conditional_independence/branch/main/graph/badge.svg?token=TC78IEMINI)](https://codecov.io/gh/uhlerlab/conditional_independence)

`conditional_independence` is a Python package for conditional independence testing.

### Install

Install the latest version of `conditional_independence`:

```

$ pip3 install conditional_independence

```

### Documentation

Documentation is available at https://conditional-independence.readthedocs.io/en/latest/

### Simple Example

```

>>> from conditional_independence import partial_correlation_suffstat, partial_correlation_test

>>> import numpy as np

>>> np.random.seed(121122)

>>> samples = np.random.normal(size=(100, 3))

>>> suffstat = partial_correlation_suffstat(samples)

>>> partial_correlation_test(suffstat, 0, 1)

{'statistic': 0.5671513111036371,

 'p_value': 0.5706113842986253,

 'reject': False}

>>> partial_correlation_test(suffstat, 0, 1, {2})

{'statistic': 0.6879909848126664,

 'p_value': 0.4914584585239892,

 'reject': False}

```

### License

Released under the 3-Clause BSD license (see LICENSE.txt):

```

Copyright (C) 2021

Chandler Squires 

```