https://github.com/ulelab/peka-eclip

Download and prepare ENCODE eCLIP raw fastq for processing with the nf-core/clipseq pipeline
https://github.com/ulelab/peka-eclip

clip nf-core

Last synced: 5 months ago
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Download and prepare ENCODE eCLIP raw fastq for processing with the nf-core/clipseq pipeline

• Host: GitHub
• URL: https://github.com/ulelab/peka-eclip
• Owner: ulelab
• License: gpl-3.0
• Created: 2021-09-01T22:40:10.000Z (almost 5 years ago)
• Default Branch: main
• Last Pushed: 2022-01-06T16:46:07.000Z (over 4 years ago)
• Last Synced: 2025-09-05T01:48:51.891Z (10 months ago)
• Topics: clip, nf-core
• Language: Nextflow
• Homepage:
• Size: 37.1 KB
• Stars: 1
• Watchers: 2
• Forks: 3
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE
  • Citation: citation.cff

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README

          
# peka-eclip

This repository contains scripts to:

- Download raw ENCODE eCLIP fastq files

- Pre-process them to ensure they can be run through the nf-core/clipseq pipeline

- Run them through the nf-core/clipseq pipeline