https://github.com/vanvalenlab/deepcell-toolbox

Data processing tools associated with deepcell
https://github.com/vanvalenlab/deepcell-toolbox

Last synced: 7 months ago
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Data processing tools associated with deepcell

• Host: GitHub
• URL: https://github.com/vanvalenlab/deepcell-toolbox
• Owner: vanvalenlab
• License: other
• Created: 2019-09-19T01:31:20.000Z (almost 7 years ago)
• Default Branch: master
• Last Pushed: 2023-11-07T05:25:16.000Z (over 2 years ago)
• Last Synced: 2025-04-28T23:52:21.277Z (about 1 year ago)
• Language: Python
• Size: 439 KB
• Stars: 11
• Watchers: 3
• Forks: 10
• Open Issues: 7
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

          
# ![DeepCell Toolbox Banner](https://raw.githubusercontent.com/vanvalenlab/deepcell-toolbox/master/docs/images/DeepCell_toolbox_Banner.png)

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A collection of tools for processing data for [`deepcell-tf`](https://github.com/vanvalenlab/deepcell-tf).

# Developer instructions

Feel free to use your preferred developer tools. Here is a simple workflow using standard tools.

From the `deepcell-toolbox` checkout, run:

```bash

python3.10 -m venv .venv

source .venv/bin/activate

pip install -e .

# Run unit tests

pytest --pyargs deecell_toolbox

```