https://github.com/vanvalenlab/deepcelltypes-2024_wang_et_al
https://github.com/vanvalenlab/deepcelltypes-2024_wang_et_al
Last synced: 11 months ago
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- Host: GitHub
- URL: https://github.com/vanvalenlab/deepcelltypes-2024_wang_et_al
- Owner: vanvalenlab
- Created: 2024-10-17T23:58:34.000Z (almost 2 years ago)
- Default Branch: master
- Last Pushed: 2025-06-30T05:08:24.000Z (about 1 year ago)
- Last Synced: 2025-08-16T09:57:15.604Z (11 months ago)
- Language: Jupyter Notebook
- Size: 2.1 MB
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 2
-
Metadata Files:
- Readme: README.md
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README
# DeepCell Types Publication Figure
This repo contains notebooks to reproduce the figures from Wang et al. (2024).
The result figures only contain a subset of ExpandedTissueNet that includes all data sourced from public datasets. It is available at https://vanvalenlab.github.io/deepcell-types/. The remaining datasets were made available to our lab before their publication. These are available upon reasonable request and will be made publicly available upon publication of the corresponding manuscripts.
## Citation
```
@article{deepcelltypes,
title={Generalized cell phenotyping for spatial proteomics with language-informed vision models},
author={Wang, Xuefei and Dilip, Rohit and Bussi, Yuval and Brown, Caitlin and Pradhan, Elora and Jain, Yashvardhan and Yu, Kevin and Li, Shenyi and Abt, Martin and Borner, Katy and others},
journal={bioRxiv},
pages={2024--11},
year={2024},
publisher={Cold Spring Harbor Laboratory}
}
```