https://github.com/veupathdb/hmmer-nextflow

Containerized nextflow workflow to replace interproscan
https://github.com/veupathdb/hmmer-nextflow

Last synced: 4 months ago
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Containerized nextflow workflow to replace interproscan

• Host: GitHub
• URL: https://github.com/veupathdb/hmmer-nextflow
• Owner: VEuPathDB
• License: gpl-3.0
• Created: 2023-04-18T16:48:39.000Z (about 3 years ago)
• Default Branch: main
• Last Pushed: 2025-04-01T20:52:56.000Z (about 1 year ago)
• Last Synced: 2025-08-06T01:31:49.714Z (11 months ago)
• Language: Nextflow
• Size: 19.5 KB
• Stars: 0
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

          
# hmmer

Containerized nextflow workflow to replace interproscan

```mermaid

flowchart TD

    p0((Channel.fromPath))

    p1([splitFasta])

    p2(( ))

    p3[hmmer:Hmmer]

    p4([collectFile])

    p5(( ))

    p0 --> p1

    p1 -->|seqs| p3

    p2 -->|appls| p3

    p3 --> p4

    p4 --> p5

```