https://github.com/vida-nyu/bdi-kit

A Python toolkit for biomedical data integration
https://github.com/vida-nyu/bdi-kit

Last synced: about 2 months ago
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A Python toolkit for biomedical data integration

• Host: GitHub
• URL: https://github.com/vida-nyu/bdi-kit
• Owner: VIDA-NYU
• License: apache-2.0
• Created: 2024-02-09T20:43:36.000Z (over 1 year ago)
• Default Branch: devel
• Last Pushed: 2024-08-27T14:53:01.000Z (9 months ago)
• Last Synced: 2024-08-30T09:15:43.384Z (9 months ago)
• Language: Python
• Homepage: https://bdi-kit.readthedocs.io
• Size: 44.8 MB
• Stars: 4
• Watchers: 8
• Forks: 1
• Open Issues: 8
• Metadata Files:
  • Readme: README.md
  • Changelog: CHANGELOG.md
  • License: LICENSE.txt

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# bdi-kit 

The `bdi-kit` is a library that assist users in performing data harmonization. It provides state-of-the-art tools to streamline the process of integrating and transforming disparate datasets (with a focus on biomedical data), and includes APIs for performing tasks such as:

- Schema matching

- Value matching

- Data transformation to a target schema/standard

**Warning:** `bdi-kit` is currently in *alpha* stage and under heavy development. Expect APIs to change.

## Documentation

Documentation is available at [https://bdi-kit.readthedocs.io/](https://bdi-kit.readthedocs.io/).

## Installation

You can install the latest stable version of this library from [PyPI](https://pypi.org/project/bdi-kit/):

```

pip install bdi-kit

```

To install the latest development version:

```

pip install git+https://github.com/VIDA-NYU/bdi-kit@devel

```

## Contributing

To learn more about making a contribution to bdi-kit, please see our [Contributing guide](./CONTRIBUTING.md).