https://github.com/virtool/workflow-create-sample
A workflow for creating Virtool samples
https://github.com/virtool/workflow-create-sample
virtool workflow
Last synced: 4 months ago
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A workflow for creating Virtool samples
- Host: GitHub
- URL: https://github.com/virtool/workflow-create-sample
- Owner: virtool
- Created: 2020-11-17T19:20:30.000Z (over 5 years ago)
- Default Branch: main
- Last Pushed: 2025-10-20T23:05:32.000Z (8 months ago)
- Last Synced: 2025-10-21T01:09:05.568Z (8 months ago)
- Topics: virtool, workflow
- Language: Python
- Homepage:
- Size: 433 KB
- Stars: 1
- Watchers: 2
- Forks: 5
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- Codeowners: .github/CODEOWNERS
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README
# workflow-create-sample
A workflow for creating Virtool samples.
## Steps
1. Run FastQC on the FASTQ data files.
2. Upload read files to the Virtool server.
3. Upload quality data to the Virtool server and finalize the sample.
## Contributing
### Commits
All commits must follow the [Conventional Commits](https://www.conventionalcommits.org/en/v1.0.0) specification.
These standardized commit messages are used to automatically publish releases using [`semantic-release`](https://semantic-release.gitbook.io/semantic-release)
after commits are merged to `main` from successful PRs.
**Example**
```text
feat: add API support for assigning labels to existing samples
```
Descriptive bodies and footers are required where necessary to describe the impact of the commit. Use bullets where appropriate.
Additional Requirements
1. **Write in the imperative**. For example, _"fix bug"_, not _"fixed bug"_ or _"fixes bug"_.
2. **Don't refer to issues or code reviews**. For example, don't write something like this: _"make style changes requested in review"_.
Instead, _"update styles to improve accessibility"_.
3. **Commits are not your personal journal**. For example, don't write something like this: _"got server running again"_
or _"oops. fixed my code smell"_.
From Tim Pope: [A Note About Git Commit Messages](https://tbaggery.com/2008/04/19/a-note-about-git-commit-messages.html)