https://github.com/virtool/workflow-create-subtraction

A workflow for creating Virtool subtractions
https://github.com/virtool/workflow-create-subtraction

virtool workflow

Last synced: 4 months ago
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A workflow for creating Virtool subtractions

• Host: GitHub
• URL: https://github.com/virtool/workflow-create-subtraction
• Owner: virtool
• Created: 2020-11-17T19:17:33.000Z (over 5 years ago)
• Default Branch: main
• Last Pushed: 2026-01-15T20:35:11.000Z (5 months ago)
• Last Synced: 2026-01-15T22:43:03.287Z (5 months ago)
• Topics: virtool, workflow
• Language: Python
• Homepage:
• Size: 34.6 MB
• Stars: 1
• Watchers: 2
• Forks: 5
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

          
# workflow-create-subtraction

A workflow for creating Virtool subtractions.

## Steps

1. Decompress FASTA file if necessary.

2. Build index for subtraction using `bowtie-build`.

3. Compress the FASTA file for upload and long term retention.

4. Upload the index files to the Virtool server and add sequence count and nucleotide distribution data to

the subtraction record.