https://github.com/virtualplantlab/plantgraphs.jl

Dynamic graphs for simulating plant growth and development
https://github.com/virtualplantlab/plantgraphs.jl

Last synced: about 2 months ago
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Dynamic graphs for simulating plant growth and development

• Host: GitHub
• URL: https://github.com/virtualplantlab/plantgraphs.jl
• Owner: VirtualPlantLab
• License: mit
• Created: 2023-08-30T10:14:57.000Z (over 1 year ago)
• Default Branch: master
• Last Pushed: 2024-09-25T09:05:45.000Z (3 months ago)
• Last Synced: 2024-09-25T10:04:56.223Z (3 months ago)
• Language: Julia
• Homepage:
• Size: 220 KB
• Stars: 1
• Watchers: 3
• Forks: 0
• Open Issues: 8
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# PlantGraphs

[![Stable](https://img.shields.io/badge/docs-stable-blue.svg)](https://virtualplantlab.com/stable/api/graphs/)

[![Dev](https://img.shields.io/badge/docs-dev-blue.svg)](https://virtualplantlab.com/dev/api/graphs/)

[![CI](https://github.com/VirtualPlantLab/PlantGraphs.jl/actions/workflows/CI.yml/badge.svg)](https://github.com/VirtualPlantLab/PlantGraphs.jl/actions/workflows/CI.yml)

[![Coverage](https://codecov.io/gh/VirtualPlantLab/PlantGraphs.jl/branch/master/graph/badge.svg?token=LCZHPERHUN)](https://codecov.io/gh/VirtualPlantLab/PlantGraphs.jl)

[![Aqua QA](https://raw.githubusercontent.com/JuliaTesting/Aqua.jl/master/badge.svg)](https://github.com/JuliaTesting/Aqua.jl)

[![ColPrac](https://img.shields.io/badge/ColPrac-Contributor's%20Guide-blueviolet)](https://github.com/SciML/ColPrac)

[![SciML Code Style](https://img.shields.io/static/v1?label=code%20style&message=SciML&color=9558b2&labelColor=389826)](https://github.com/SciML/SciMLStyle)

[![DOI](https://zenodo.org/badge/685009820.svg)](https://zenodo.org/doi/10.5281/zenodo.10256521)

The goal of PlantGraphs.jl is to provide a framework for building dynamic graphs for

functional-structural plant models. This package is a component of the

[Virtual Plant Lab](http://virtualplantlab.com/). Users should install instead the

interface package [VirtualPlantLab.jl](https://github.com/VirtualPlantLab/VirtualPlantLab.jl).

# 1. Installation

You can install the latest stable version of PlantGraphs.jl with the Julia package manager:

```julia

] add PlantGraphs

```

Or the development version directly from here:

```julia

import Pkg

Pkg.add(url="https://github.com/VirtualPlantLab/PlantGraphs.jl", rev = "master")

```

# 2. Usage

Graphs from PlantGraphs.jl implement methods for most functions in the AbstractTrees.jl

package, plus additional methods specific for functional-structural plant models. The

following example shows how to create a simple graph, run a dynamic simulation and visualize

the graph (check documentation for more details and examples):

```julia

using PlantGraphs

module algae

    import PlantGraphs: Node

    struct A <: Node end

    struct B <: Node end

end

import .algae

axiom = algae.A()

rule1 = Rule(algae.A, rhs = x -> algae.A() + algae.B())

rule2 = Rule(algae.B, rhs = x -> algae.A())

organism = Graph(axiom = axiom, rules = (rule1, rule2))

import CairoMakie

draw(organism)

rewrite!(organism)

draw(organism)

```