https://github.com/vitek-lab/msstatsbionet
https://github.com/vitek-lab/msstatsbionet
Last synced: 4 months ago
JSON representation
- Host: GitHub
- URL: https://github.com/vitek-lab/msstatsbionet
- Owner: Vitek-Lab
- License: other
- Created: 2024-07-19T22:48:09.000Z (almost 2 years ago)
- Default Branch: devel
- Last Pushed: 2026-01-10T00:30:31.000Z (5 months ago)
- Last Synced: 2026-01-10T22:20:59.977Z (5 months ago)
- Language: R
- Homepage: https://vitek-lab.github.io/MSstatsBioNet/
- Size: 11 MB
- Stars: 2
- Watchers: 3
- Forks: 0
- Open Issues: 2
-
Metadata Files:
- Readme: README.md
- Changelog: NEWS.md
- License: LICENSE
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README
# MSstatsBioNet
[](https://codecov.io/github/Vitek-Lab/MSstatsBioNet)
This package provides a suite of functions to query various network databases,
filter queries & results, and visualize networks.
## Installation Instructions
To install this package on bioconductor, run the following command:
```
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MSstatsBioNet")
```
You can install the development version of this package through Github:
```
devtools::install_github("Vitek-Lab/MSstatsBioNet", build_vignettes = TRUE)
```
## License
This package is distributed under the [Artistic-2.0](https://opensource.org/licenses/Artistic-2.0) license. However, its dependencies may have different licenses.
Notably, INDRA is distributed under the [BSD 2-Clause](https://opensource.org/license/bsd-2-clause) license. Furthermore, INDRA's knowledge sources may have different licenses for commercial applications. Please refer to the [INDRA README](https://github.com/sorgerlab/indra?tab=readme-ov-file#indra-modules) for more information on its knowledge sources and their associated licenses.
## Databases Supported
- INDRA
## Filtering Options Supported
- P-Value Filter
## Visualization Options Supported
- Cytoscape Desktop