https://github.com/vjcitn/biocnihintra
Bioconductor examples for NIH Intramural demonstrations of AnVIL
https://github.com/vjcitn/biocnihintra
anvil bioconductor genomics
Last synced: 4 months ago
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Bioconductor examples for NIH Intramural demonstrations of AnVIL
- Host: GitHub
- URL: https://github.com/vjcitn/biocnihintra
- Owner: vjcitn
- Created: 2023-05-16T22:44:37.000Z (about 2 years ago)
- Default Branch: main
- Last Pushed: 2023-05-17T10:29:49.000Z (about 2 years ago)
- Last Synced: 2025-01-09T13:46:26.072Z (5 months ago)
- Topics: anvil, bioconductor, genomics
- Language: R
- Homepage: https://vjcitn.github.io/BiocNIHIntra/
- Size: 2.04 MB
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
Awesome Lists containing this project
README
# BiocNIHIntra
Bioconductor examples for NIH Intramural demonstrations of AnVIL
First vignette addresses
- learning about SummarizedExperiment to manage multiple samples
constituting reference expression data on selected cell types
- learning about SingleCellExperiment to work with expression
patterns on thousands of cells
- using the SingleR package and function to train a
classifier of cell types and label a sample of PBMCs
assayed with TENx
- projecting expression patterns for visualization using approximate PCA
- using plotly to visualize clusters with labels