https://github.com/vjcitn/biocov

An overview of Bioconductor with applications to multiomics, genome representation, and single-cell biologiy
https://github.com/vjcitn/biocov

bioconductor bsgenome genomics single-cell tcga

Last synced: 3 months ago
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An overview of Bioconductor with applications to multiomics, genome representation, and single-cell biologiy

• Host: GitHub
• URL: https://github.com/vjcitn/biocov
• Owner: vjcitn
• Created: 2023-04-22T13:32:23.000Z (about 2 years ago)
• Default Branch: main
• Last Pushed: 2023-05-03T04:02:46.000Z (about 2 years ago)
• Last Synced: 2025-01-09T13:46:08.128Z (5 months ago)
• Topics: bioconductor, bsgenome, genomics, single-cell, tcga
• Language: R
• Homepage: https://vjcitn.github.io/BiocOV
• Size: 4.31 MB
• Stars: 0
• Watchers: 2
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        


# BiocOV: a package with a brief overview of Bioconductor concepts

This package includes vignettes, functions and illustrative data on the

following topics

- MultiAssayExperiment representation of The Cancer Genome Atlas, with

illustration of survival analysis

![](https://raw.githubusercontent.com/vjcitn/BiocOV/main/man/figures/tcgaface.jpg)

- Genome representation with Biostrings, BSgenome, and TxDb packages

![](https://raw.githubusercontent.com/vjcitn/BiocOV/main/man/figures/igvtx.jpg)

- Single-cell transcriptomics with scRNAseq and scater, including

exploration of the Human Cell Atlas and Cell Ontology

![](https://raw.githubusercontent.com/vjcitn/BiocOV/main/man/figures/scqc.jpg)

Other topics should be proposed and added over time.