https://github.com/vmesel/biopipe

Docker image and Bioinfo pipeline for Instituto Butantan
https://github.com/vmesel/biopipe

Last synced: 28 days ago
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Docker image and Bioinfo pipeline for Instituto Butantan

• Host: GitHub
• URL: https://github.com/vmesel/biopipe
• Owner: vmesel
• Created: 2016-09-13T20:23:48.000Z (about 8 years ago)
• Default Branch: master
• Last Pushed: 2016-11-25T20:00:13.000Z (almost 8 years ago)
• Last Synced: 2023-10-20T23:42:47.205Z (about 1 year ago)
• Language: PostScript
• Size: 122 KB
• Stars: 1
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
# Pipeline de Sequencias de lincRNA

Pipeline para uso na pesquisa sobre lincRNAs que está ocorrendo no instituto butantan

Para usar o pipeline, baixe o docker e instale a imagem que está neste repositório!

Ao logar, você irá executar os seguintes comandos:

´´´

cd /BioPipe/

python pipe_lncap.py

´´´

## Rodando Docker do Pipeline

```bash

docker build -t butantan/pipelinev2-4 /work/users/vinicius/GitHub/BioInfo/SomentePipeline/.

docker run -u `id -u $USER` -v /home/vinicius/BigWig/useful/:/sharedFolder/ -v /work/users/vinicius/outputs/:/outputs/ -it butantan/pipelinev2-4 /bin/bash

```