https://github.com/vsoch/rstudio-neuro
Dockerized rstudio with some statistics and neuro packages!
https://github.com/vsoch/rstudio-neuro
docker neuro rstudio
Last synced: about 1 month ago
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Dockerized rstudio with some statistics and neuro packages!
- Host: GitHub
- URL: https://github.com/vsoch/rstudio-neuro
- Owner: vsoch
- License: mit
- Created: 2018-01-31T21:30:07.000Z (about 7 years ago)
- Default Branch: master
- Last Pushed: 2018-01-31T22:51:20.000Z (about 7 years ago)
- Last Synced: 2025-01-28T00:22:10.859Z (3 months ago)
- Topics: docker, neuro, rstudio
- Size: 5.86 KB
- Stars: 1
- Watchers: 3
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
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README
# Building Instructions
The Dockerfile here will build the experiment from the repository, along with
a simple test task. This image is also an automated build on [Docker Hub](https://hub.docker.com/r/vanessa/rstudio-neuro/)
if you don't want to build locally (it takes a bit of time!).
```
git clone https://www.github.com/vsoch/rstudio-neuro
cd rstudio-neuro
docker build -t vanessa/rstudio-neuro .
```
Don't forget the `.` at the end! It means the present working directory. And the image knows WHAT'S UP.
```
...
Removing intermediate container 8d4fef74f7ea
Step 36/36 : RUN cat /hello.txt
---> Running in d33b4e507d04
____ _ _ _ _ _ _____ _______ ___
| _ \ ___ | | __| |_ __ __ _ ___| | _| | __ _| |__ | ___|_ _\ \ / / |
| |_) / _ \| |/ _` | '__/ _` |/ __| |/ / |/ _` | '_ \ | |_ | | \ \ /\ / /| |
| __/ (_) | | (_| | | | (_| | (__| <| | (_| | |_) | | _| | | \ V V / |_|
|_| \___/|_|\__,_|_| \__,_|\___|_|\_\_|\__,_|_.__( ) |_| |_| \_/\_/ (_)
|/
---> 3a874bc1da02
Removing intermediate container d33b4e507d04
Successfully built 3a874bc1da02
Successfully tagged vanessa/rstudio-neuro:latest
```
# Running
The image `vanessa/rstudio-neuro` can be run as follows. In the example, we want to mount the directory where data has been downloaded (`/data`) to a directory on our host, and we want to expose port `8787` where rstudio server is running.
```
# Without mounting the data folder
docker run -p 8787:8787 vanessa/rstudio-neuro
# Mounting the data folder
docker run -v $PWD:/data -p 8787:8787 vanessa/rstudio-neuro
# Run in detached mode
docker run -d -v $PWD:/data -p 8787:8787 vanessa/rstudio-neuro
```
Then visit [http://localhost:8787](http://localhost:8787) in your browser. You need to login with:
- username: rstudio
- password: rstudio
The data downloaded should be present in your files, and in the image it's located under `/home/rstudio`