https://github.com/walterxie/beast2stats
Basic statistics of BEAST2 development
https://github.com/walterxie/beast2stats
beast2
Last synced: 3 months ago
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Basic statistics of BEAST2 development
- Host: GitHub
- URL: https://github.com/walterxie/beast2stats
- Owner: walterxie
- License: mit
- Created: 2018-08-07T22:40:12.000Z (almost 7 years ago)
- Default Branch: master
- Last Pushed: 2022-05-30T05:38:40.000Z (about 3 years ago)
- Last Synced: 2025-02-02T02:28:00.311Z (5 months ago)
- Topics: beast2
- Language: HTML
- Homepage: https://walterxie.github.io/beast2stats/
- Size: 2.52 MB
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
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README
## Basic statistics
Do you know how the BEAST 2 project was going since 2014?
Here is the answer:
The three lines are:
1. the lines of Java code of BEAST 2 core as a function of time (per month) since 2014;
2. the lines of Java code of other packages excluding BEAST 2 core as a function of time (per month) since 2014;
3. the number of other packages created during the period.
The vertical lines are major releases of BEAST 2 core.
The data was collected at the first day of each month.
But there were two packages not included in this summary because the source code was not available by then.
## The detail
### BEAST 2 core
### Other packages excluding BEAST 2 core
The released packages in [CBAN for BEAST 2.6](https://github.com/CompEvol/CBAN/raw/master/packages2.6.xml)
were chosen in this summary.
The livetime summary of all BEAST 2 packages are also available from BEAST 2
[Package Viewer](https://compevol.github.io/CBAN/).
Because the first release date of packages was not easy to access,
I used the date when the package started to have a LoC (lines of Java code) record,
and adjusted the data according to the history of CBAN XML in this summary.
The bar charts:
The 3D interactive view is also [available](https://walterxie.github.io/beast2stats/3d) using Safari or Chrome.
## Pipeline
```bash
# source code has to be ready before analysis
cd ~/WorkSpace
git clone https://github.com/CompEvol/beast2.git
ls
# check out beast2stats project
git clone https://github.com/walterxie/beast2stats.git
# start pipeline
cd ~/WorkSpace/beast2stats
# save code stats to *.txt in tmp-yyyy-mm-dd
PACKAGE_DIR="beast2"
./createStats.sh $PACKAGE_DIR
# create *.svg in figures
Rscript beast2Stats.R
# other packages: check out code, calculate stats and create fig
Rscript packagesStats.R
```