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https://github.com/warelab/gramene-bedify

gramene gramene-search

Last synced: 20 days ago
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Host: GitHub
URL: https://github.com/warelab/gramene-bedify
Owner: warelab
License: mit
Created: 2016-02-29T16:56:18.000Z (almost 9 years ago)
Default Branch: master
Last Pushed: 2017-03-27T19:18:52.000Z (almost 8 years ago)
Last Synced: 2024-12-09T07:07:50.000Z (about 1 month ago)
Topics: gramene, gramene-search
Language: JavaScript
Size: 29.3 KB
Stars: 0
Watchers: 3
Forks: 0
Open Issues: 1
Metadata Files:
- Readme: README.md
- License: LICENSE

Awesome Lists containing this project

README

# gramene-bedify
Convert gramene gene JSON documents into tab delimited bed format. Two parameters, bedFeature and bedCombiner define the behavior.

bedFeature defaults to 'gene', but other options include: 'exon', 'intron', 'CDS', 'utr5', or 'utr3'
bedCombiner defaults to 'canonical', but 'all' is available too

[![Build Status](https://travis-ci.org/warelab/gramene-bedify.svg?branch=master)](https://travis-ci.org/warelab/gramene-bedify)