https://github.com/warelab/gramene-bedify

https://github.com/warelab/gramene-bedify

gramene gramene-search

Last synced: 8 months ago
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• Host: GitHub
• URL: https://github.com/warelab/gramene-bedify
• Owner: warelab
• License: mit
• Created: 2016-02-29T16:56:18.000Z (over 10 years ago)
• Default Branch: master
• Last Pushed: 2017-03-27T19:18:52.000Z (about 9 years ago)
• Last Synced: 2025-01-26T07:03:30.002Z (over 1 year ago)
• Topics: gramene, gramene-search
• Language: JavaScript
• Size: 29.3 KB
• Stars: 0
• Watchers: 3
• Forks: 0
• Open Issues: 1
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

          
# gramene-bedify

Convert gramene gene JSON documents into tab delimited bed format. Two parameters, bedFeature and bedCombiner define the behavior.

bedFeature defaults to 'gene', but other options include: 'exon', 'intron', 'CDS', 'utr5', or 'utr3'

bedCombiner defaults to 'canonical', but 'all' is available too

[![Build Status](https://travis-ci.org/warelab/gramene-bedify.svg?branch=master)](https://travis-ci.org/warelab/gramene-bedify)