https://github.com/we-gold/crop-locator-tool

Locates crops taken from micro-CT scans using JavaScript and GPU acceleration (CURRENTLY ONLY SUPPORTS SPECIFIC LAB FORMATS).
https://github.com/we-gold/crop-locator-tool

image image-processing javascript js medical-imaging template-matching tiff

Last synced: 9 days ago
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Locates crops taken from micro-CT scans using JavaScript and GPU acceleration (CURRENTLY ONLY SUPPORTS SPECIFIC LAB FORMATS).

• Host: GitHub
• URL: https://github.com/we-gold/crop-locator-tool
• Owner: We-Gold
• License: mit
• Created: 2021-07-01T11:05:02.000Z (over 3 years ago)
• Default Branch: main
• Last Pushed: 2021-07-29T15:23:37.000Z (over 3 years ago)
• Last Synced: 2024-11-10T09:12:22.454Z (2 months ago)
• Topics: image, image-processing, javascript, js, medical-imaging, template-matching, tiff
• Language: JavaScript
• Homepage: https://wegold.me/Crop-Locator-Tool/
• Size: 2.23 MB
• Stars: 2
• Watchers: 3
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# Crop Locator Tool

A tool that locates crops taken from medical images (tiffs), including rotated and resliced crops.

This tool is useful in a lab setting, for example, a crop is taken from a 3D tiff in Fiji, but the location is not recorded. Upload the original image and the crop to our tool, and it will locate the crop.

## Usage

Visit [https://we-gold.github.io/Crop-Locator-Tool/](https://we-gold.github.io/Crop-Locator-Tool/) for the web-based user interface.

## Installation

For development purposes, this repository can be installed locally via the following steps.

1. Clone the repository locally

2. Make sure *Node.js >= 14* and *npm >= 7* are installed

3. Enter the local repository

4. Run `npm install`

5. Run `npm run dev` to start a local server running the code

### Testing and Development

See the [project wiki](https://github.com/We-Gold/Crop-Locator-Tool/wiki) for documentation.

## Browser Compatibility

This tool has been tested on modern versions of Chrome, Edge, and Firefox. It does not work on IE, and is untested on Safari.

## License

The code is available under the [MIT License](https://github.com/We-Gold/Crop-Locator-Tool/blob/main/LICENSE).