https://github.com/weinbergerlab/danish-serotype

JAGS code for hierarchical model of serotypes
https://github.com/weinbergerlab/danish-serotype

Last synced: 14 days ago
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JAGS code for hierarchical model of serotypes

• Host: GitHub
• URL: https://github.com/weinbergerlab/danish-serotype
• Owner: weinbergerlab
• Created: 2018-05-07T13:55:36.000Z (over 6 years ago)
• Default Branch: master
• Last Pushed: 2020-02-19T16:36:48.000Z (almost 5 years ago)
• Last Synced: 2024-11-05T10:33:14.829Z (2 months ago)
• Size: 641 KB
• Stars: 0
• Watchers: 1
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
# Danish-serotype

JAGS code for hierarchical model of serotypes. jags_model.R contains the JAGS model itself. "run model.R" loads data, processes data, and plots output 

Note that the data provided are NOT observed numebrs of cases. These are drawn from a Poisson distribution, where the mean is equal to the model fitted value for the corresponding serotype/age group/comorbidity level/epi-year. therefore, using these data with the provided code will give answer similar to, but not equal to the estimates from the paper.

Figure S6: Observed vs expected incidence of IPD for each serotype, age groups, comorbidity-level stratification. Dots indicate observed values, black line indicates the fitted value, red line +/- 95% CI indicates expected incidence in the absence of vaccine.