https://github.com/weinbergerlab/ncbi-genome-assembly-retrieval

How to batch-download genome assemblies from NCBI
https://github.com/weinbergerlab/ncbi-genome-assembly-retrieval

Last synced: 14 days ago
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How to batch-download genome assemblies from NCBI

• Host: GitHub
• URL: https://github.com/weinbergerlab/ncbi-genome-assembly-retrieval
• Owner: weinbergerlab
• Created: 2020-04-03T03:57:04.000Z (almost 5 years ago)
• Default Branch: main
• Last Pushed: 2020-07-27T20:30:56.000Z (over 4 years ago)
• Last Synced: 2024-11-05T10:33:04.228Z (2 months ago)
• Language: R
• Size: 17.6 KB
• Stars: 0
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: readme.md

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README

        
# NCBI Genome Assembly Batch Retrieval Example

1. Download this project (or clone it in git).

2. Open `assembly-retrieval.Rproj`. The first time you open it, it will take a minute; that's normal.

3. Open `assembly-retrieval.Rmd`.

4. Choose Code > Run Region > Run All. The first time you run it, it will automatically install the required packages. You're welcome!

5. Follow along with the code

6. Send me questions