https://github.com/werserk/ct-segment-all-module

https://github.com/werserk/ct-segment-all-module

Last synced: 3 days ago
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• Host: GitHub
• URL: https://github.com/werserk/ct-segment-all-module
• Owner: werserk
• License: apache-2.0
• Created: 2024-01-22T02:21:56.000Z (10 months ago)
• Default Branch: master
• Last Pushed: 2024-01-22T04:18:27.000Z (10 months ago)
• Last Synced: 2024-01-22T05:27:51.070Z (10 months ago)
• Language: Jupyter Notebook
• Size: 81.7 MB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# Whole body CT segmentation module

## Setup

Tested on: Ubuntu LTS 23.04, Python 3.9

```bash

pip install -r requirements.txt

```

## References

This project uses MONAI weights, which are licensed

under [Apache License 2.0](http://www.apache.org/licenses/LICENSE-2.0).

- Tang, Y., Gao, R., Lee, H.H., et al. (2021). High-resolution 3D abdominal segmentation with random patch network

  fusion. Medical Image Analysis, 69, 101894.

- Wasserthal, J., Meyer, M., Breit, H.C., et al. (2022). TotalSegmentator: Robust segmentation of 104 anatomical

  structures in CT images. arXiv:2208.05868.

- Myronenko, A., Siddiquee, M.M.R., Yang, D., et al. (2022). Automated head and neck tumor segmentation from 3D PET/CT.

  arXiv:2209.10809.