https://github.com/westlake-ai/poincaredmt
https://github.com/westlake-ai/poincaredmt
Last synced: about 1 month ago
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- Host: GitHub
- URL: https://github.com/westlake-ai/poincaredmt
- Owner: Westlake-AI
- Created: 2024-08-27T19:19:28.000Z (10 months ago)
- Default Branch: main
- Last Pushed: 2024-09-05T23:50:05.000Z (10 months ago)
- Last Synced: 2024-10-21T13:38:54.430Z (8 months ago)
- Language: Python
- Size: 10.9 MB
- Stars: 1
- Watchers: 0
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
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README
## Complex hierarchical structures analysis in single-cell data with Poincaré deep manifold transformation
## Overview
## Installation
1. **Install dependencies**:
conda env create -f env.yaml
2. **Activate environment**:
conda activate poincaredmt
## Usage
1. **Dimensionality reduction**:
python main.py
2. **Batch correction**:
python main_batch_correction.py
3. **Visualization and Pseudotime inference**:
python main_visualization_pseudotime.py
4. **Gene selection**:
python main_gene_selection.py
5. **Baseline**:
python main_baseline.py || main_baseline_batch_correction.py
## Contact
If you have any problem about this package, please create an Issue or send us an Email at:
- **Author**: [Yongjie Xu][[email protected]]
- **Author**: [Zelin Zang][[email protected]]