https://github.com/whatshap/whatshap

Read-based phasing of genomic variants, also called haplotype assembly
https://github.com/whatshap/whatshap

Last synced: 9 months ago
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Read-based phasing of genomic variants, also called haplotype assembly

• Host: GitHub
• URL: https://github.com/whatshap/whatshap
• Owner: whatshap
• License: mit
• Created: 2020-07-02T14:53:00.000Z (over 5 years ago)
• Default Branch: main
• Last Pushed: 2025-02-04T13:50:58.000Z (11 months ago)
• Last Synced: 2025-03-11T14:45:52.992Z (9 months ago)
• Language: Python
• Homepage: https://whatshap.readthedocs.io
• Size: 22.7 MB
• Stars: 351
• Watchers: 13
• Forks: 41
• Open Issues: 179
• Metadata Files:
  • Readme: README.md
  • Changelog: CHANGES.rst
  • Contributing: CONTRIBUTING.rst
  • License: LICENSE
  • Citation: CITATION.rst

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README

          
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![WhatsHap logo](https://github.com/whatshap/whatshap/raw/main/logo/whatshap_logo.png)

WhatsHap is a software for phasing genomic variants using DNA sequencing

reads, also called *read-based phasing* or *haplotype assembly*. It is

especially suitable for long reads, but works also well with short reads.

For documentation and information on how to cite WhatsHap, please visit the [WhatsHap Homepage](https://whatshap.readthedocs.io/)