https://github.com/whitead/minimalaf

Minimal AlphaFold
https://github.com/whitead/minimalaf

Last synced: 15 days ago
JSON representation

Minimal AlphaFold

• Host: GitHub
• URL: https://github.com/whitead/minimalaf
• Owner: whitead
• Created: 2024-07-17T00:11:55.000Z (6 months ago)
• Default Branch: main
• Last Pushed: 2024-08-24T16:46:37.000Z (4 months ago)
• Last Synced: 2024-12-10T05:42:06.636Z (24 days ago)
• Language: Python
• Size: 3.91 KB
• Stars: 54
• Watchers: 2
• Forks: 2
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

Awesome Lists containing this project

README

        
# Minimal AlphaFold

Install:

```bash

pip install -r requirements.txt

modal deploy af.py

```

Usage from python (also in `run.py`):

```py

import modal

fasta = """\

>A chain

MTEYKLVVVGAGGVGKSALTIQLIQNHKLRKLNPPDESGPGCMNCKCVIS"""

af = modal.Function.lookup("minimalaf", "fold")

result = af.remote(fasta=fasta, 

          models=[1],

          num_recycles=1)

with open("results.zip", "wb") as f:

    f.write(result)

```

## Copyright

CC0. No Rights Reserved