https://github.com/wiheto/teneto

Temporal Network Tools
https://github.com/wiheto/teneto

bids community-detection dynamics fmri network-theory networks neuroscience python temporal-network-theory temporal-networks time-varying-connectivity

Last synced: about 1 month ago
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Temporal Network Tools

• Host: GitHub
• URL: https://github.com/wiheto/teneto
• Owner: wiheto
• License: gpl-3.0
• Created: 2016-06-19T20:14:30.000Z (about 8 years ago)
• Default Branch: master
• Last Pushed: 2023-11-13T08:52:43.000Z (10 months ago)
• Last Synced: 2024-08-01T09:27:06.063Z (about 2 months ago)
• Topics: bids, community-detection, dynamics, fmri, network-theory, networks, neuroscience, python, temporal-network-theory, temporal-networks, time-varying-connectivity
• Language: Python
• Homepage:
• Size: 22.6 MB
• Stars: 85
• Watchers: 5
• Forks: 26
• Open Issues: 18
• Metadata Files:
  • Readme: README.md
  • Changelog: CHANGELOG.md
  • Contributing: CONTRIBUTING.md
  • License: LICENSE
  • Code of conduct: CODE_OF_CONDUCT.md

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README

        
# Teneto

[![Documentation Status](https://readthedocs.org/projects/teneto/badge/?version=latest)](http://teneto.readthedocs.io/en/latest/?badge=latest)

[![PyPI version](https://badge.fury.io/py/teneto.svg)](https://badge.fury.io/py/teneto)

[![Build Status](https://travis-ci.org/wiheto/teneto.svg?branch=master)](https://travis-ci.org/wiheto/teneto)

[![Codacy Badge](https://api.codacy.com/project/badge/Grade/5e492e68a0c841b6a7118b91f0ad2716)](https://www.codacy.com/app/wiheto/teneto?utm_source=github.com&utm_medium=referral&utm_content=wiheto/teneto&utm_campaign=Badge_Grade)

[![Coverage Status](https://coveralls.io/repos/github/wiheto/teneto/badge.svg?branch=master)](https://coveralls.io/github/wiheto/teneto?branch=master)

[![DOI](https://zenodo.org/badge/61498436.svg)](https://zenodo.org/badge/latestdoi/61498436)

**Te**mporal **ne**twork **to**ols.

## What is the package

Package includes various tools for analyzing temporal network data. Temporal network measures, temporal network generation, derivation of time-varying/dynamic connectivities, plotting functions.

Some extra focus is placed on neuroimaging data (e.g. compatible with BIDS - _NB: currently not compliant with latest release candidate of BIDS Derivatives_).

## Installation

With pip installed:

`pip install teneto`

to upgrade teneto:

`pip install teneto -U`

Requires: Python 3.6+

Installing teneto via pip installs all python package requirements as well.

## Documentation

More detailed documentation can be found at  [teneto.readthedocs.io](https://teneto.readthedocs.io) and includes tutorials.

## Outlook

This package is under active development. And a lot of changes will still be made.

## Contributers

For a list of contributors to teneto, see:  [teneto.readthedocs.io](https://teneto.readthedocs.io/en/latest/contribute.html)

## Cite

If using this, please cite us. At present we do not have a dedicated article about teneto, but you can cite the software using the [Zenodo DOI](https://doi.org/10.5281/zenodo.2535993) and/or the article where teneto is introduced, along with a considerable discussion about many of the measures in teneto:

Thompson et al (2017) "From static to temporal network theory applications to functional brain connectivity." _Network Neuroscience_, 2: 1. p.69-99  [Link](https://www.mitpressjournals.org/doi/abs/10.1162/NETN_a_00011)