https://github.com/wsowens/filtercov

Blazingly fast Rust program that filters bedGraph-like files for coverage.
https://github.com/wsowens/filtercov

Last synced: about 1 month ago
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Blazingly fast Rust program that filters bedGraph-like files for coverage.

• Host: GitHub
• URL: https://github.com/wsowens/filtercov
• Owner: wsowens
• License: gpl-3.0
• Created: 2019-02-28T17:35:18.000Z (almost 6 years ago)
• Default Branch: master
• Last Pushed: 2019-05-17T20:03:29.000Z (over 5 years ago)
• Last Synced: 2024-08-02T05:23:13.479Z (4 months ago)
• Language: Rust
• Size: 82 KB
• Stars: 0
• Watchers: 0
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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• awesome-blazingly-fast - filtercov - Blazingly fast Rust program that filters bedGraph-like files for coverage. (Rust)

README

        
# filtercov

Blazingly fast Rust program that filters bedGraph-like files for coverage.

## Compiling

Compile with the following command

```

cargo build --release

```

The binary will be located in `target/release/filtercov

## Running

Simply run

```

filtercov "lvl1 lvl2..." file1 file2...

```

A file will be produced for each input file at each level.

Example:

```

../target/release/filtercov "5 10 30" test1.bed test2.bed

[5, 10, 30]

["test1.bed", "test2.bed"]

test1.bed -> test1.5.bed

test2.bed -> test2.5.bed

test1.5.bed -> test1.10.bed

test2.5.bed -> test2.10.bed

test1.10.bed -> test1.30.bed

test2.10.bed -> test2.30.bed

```