https://github.com/wtsi-hgi/cwl-dummy

Generates CWL files that do nothing.
https://github.com/wtsi-hgi/cwl-dummy

common-workflow-language cwl

Last synced: 24 days ago
JSON representation

Generates CWL files that do nothing.

• Host: GitHub
• URL: https://github.com/wtsi-hgi/cwl-dummy
• Owner: wtsi-hgi
• License: mit
• Created: 2018-08-07T15:13:23.000Z (over 6 years ago)
• Default Branch: master
• Last Pushed: 2018-09-07T15:15:24.000Z (over 6 years ago)
• Last Synced: 2024-04-15T03:07:13.525Z (8 months ago)
• Topics: common-workflow-language, cwl
• Language: Python
• Homepage:
• Size: 57.6 KB
• Stars: 0
• Watchers: 3
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

Awesome Lists containing this project

README

        
# cwl-dummy

Generates CWL files that use [cwl-dummy-tool][] to do nothing.

[cwl-dummy-tool]: https://github.com/wtsi-hgi/cwl-scheduler-tests

## Usage

Install via Pip:

```

python3.6 -m venv venv

source venv/bin/activate

pip install git+https://github.com/wtsi-hgi/cwl-dummy

```

Then run cwl-dummy on the tool or workflow you'd like to mock (in the

case of a workflow, all tools and subworkflows used by the workflow will

be automatically recursively processed):

```

cwl-dummy my-workflow.cwl

```

Fix any errors reported, and check all warnings, then run the

newly-generated workflow:

```

cwl-runner my-workflow.cwl.dummy

```

## Limitations

cwl-dummy does not use schema-salad to preprocess documents, so it's not

able to cope with documents that make use of more complex schema-salad

features (`$graph`, `$import`, `$include`, relative identifiers, etc.).

## License

Copyright (C) 2018 Genome Research Ltd.

cwl-dummy is distributed under the terms of the MIT license, a copy of

which can be found in the file `LICENSE`.

cwl-dummy is based on [cwl-upgrader][], which is used under the terms of

the Apache license, version 2.0; a copy of the Apache license is

available in the file `LICENSE.APACHE`.

[cwl-upgrader]: https://github.com/common-workflow-language/cwl-upgrader