https://github.com/wtsi-npg/bambi

Process Illumina instrument data into SAM/BAM/CRAM files.
https://github.com/wtsi-npg/bambi

bam-files bioinformatics htslib illumina

Last synced: 4 months ago
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Process Illumina instrument data into SAM/BAM/CRAM files.

• Host: GitHub
• URL: https://github.com/wtsi-npg/bambi
• Owner: wtsi-npg
• License: agpl-3.0
• Created: 2016-04-12T13:37:58.000Z (about 10 years ago)
• Default Branch: devel
• Last Pushed: 2024-07-30T08:05:42.000Z (almost 2 years ago)
• Last Synced: 2024-07-30T11:17:01.056Z (almost 2 years ago)
• Topics: bam-files, bioinformatics, htslib, illumina
• Language: C
• Homepage: http://wtsi-npg.github.io/bambi
• Size: 179 MB
• Stars: 9
• Watchers: 9
• Forks: 15
• Open Issues: 8
• Metadata Files:
  • Readme: README.md
  • Changelog: ChangeLog
  • License: LICENSE

Awesome Lists containing this project

README

          
# bambi

A set of programs to manipulate SAM/BAM/CRAM files, using HTSLIB

to install:

clone into a local directory (eg 'bambi')

`cd bambi`

`autoreconf -i`

`configure --prefix= --with-htslib=`

(eg configure --prefix=/usr/local/bambi --with-htslib=/usr/local/htslib/1.3)

`make`

`make check` (to run tests)