https://github.com/xarray-contrib/xbatcher

Batch generation from xarray datasets
https://github.com/xarray-contrib/xbatcher

keras pytorch tensorflow xarray xarray-accessor

Last synced: about 13 hours ago
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Batch generation from xarray datasets

• Host: GitHub
• URL: https://github.com/xarray-contrib/xbatcher
• Owner: xarray-contrib
• License: apache-2.0
• Created: 2018-10-29T19:55:10.000Z (almost 6 years ago)
• Default Branch: main
• Last Pushed: 2024-09-23T02:01:12.000Z (2 days ago)
• Last Synced: 2024-09-23T07:32:33.068Z (2 days ago)
• Topics: keras, pytorch, tensorflow, xarray, xarray-accessor
• Language: Python
• Homepage: https://xbatcher.readthedocs.io
• Size: 441 KB
• Stars: 163
• Watchers: 14
• Forks: 27
• Open Issues: 35
• Metadata Files:
  • Readme: README.rst
  • Contributing: CONTRIBUTING.md
  • License: LICENSE

Awesome Lists containing this project

README

        
xbatcher: Batch Generation from Xarray Datasets

===============================================

|Build Status| |codecov| |docs| |pypi| |conda-forge| |license| |zenodo|

Xbatcher is a small library for iterating Xarray DataArrays and Datasets in

batches. The goal is to make it easy to feed Xarray objects to machine

learning libraries such as PyTorch_ or TensorFlow_. View the |docs| for more

info.

.. _TensorFlow: https://www.tensorflow.org/

.. _PyTorch: https://pytorch.org/

.. |Build Status| image:: https://github.com/xarray-contrib/xbatcher/workflows/CI/badge.svg

   :target: https://github.com/xarray-contrib/xbatcher/actions

   :alt: github actions build status

.. |codecov| image:: https://codecov.io/gh/xarray-contrib/xbatcher/branch/main/graph/badge.svg

   :target: https://codecov.io/gh/xarray-contrib/xbatcher

   :alt: code coverage

.. |docs| image:: http://readthedocs.org/projects/xbatcher/badge/?version=latest

   :target: http://xbatcher.readthedocs.org/en/latest/?badge=latest

   :alt: docs

.. |pypi| image:: https://img.shields.io/pypi/v/xbatcher.svg

   :target: https://pypi.python.org/pypi/xbatcher

   :alt: pypi

.. |conda-forge| image:: https://img.shields.io/conda/vn/conda-forge/xbatcher.svg

   :target: https://anaconda.org/conda-forge/xbatcher

   :alt: conda-forge

.. |license| image:: https://img.shields.io/github/license/xarray-contrib/xbatcher.svg

   :target: https://github.com/xarray-contrib/xbatcher

   :alt: license

.. |zenodo| image:: https://zenodo.org/badge/DOI/10.5281/zenodo.13776824.svg

   :target: https://doi.org/10.5281/zenodo.13776824

   :alt: zenodo

Installation

------------

Xbatcher can be installed from PyPI as::

    python -m pip install xbatcher

Or via Conda as::

    conda install -c conda-forge xbatcher

Or from source as::

    python -m pip install git+https://github.com/xarray-contrib/xbatcher.git

.. note::

   The required dependencies installed with Xbatcher are `Xarray `_,

   `Dask `_, and `NumPy `_.

   You will need to separately install `TensorFlow `_

   or `PyTorch `_ to use those data loaders or

   Xarray accessors. `Review the installation instructions `_

   for more details.

Documentation

-------------

Documentation is hosted on ReadTheDocs: https://xbatcher.readthedocs.org

License

------------

Apache License 2.0, see LICENSE file.

Acknowledgements

----------------

This work was funded in part by:

NASA ACCESS19-0049: Pangeo ML: Open Source Tools and Pipelines for Scalable Machine Learning Using NASA Earth Observation Data

This work was motivated by many conversations in the Pangeo community and Pangeo ML working group