https://github.com/xryanglab/xtail

Genome-wide assessment of differential translations with ribosome profiling data
https://github.com/xryanglab/xtail

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Genome-wide assessment of differential translations with ribosome profiling data

• Host: GitHub
• URL: https://github.com/xryanglab/xtail
• Owner: xryanglab
• License: gpl-3.0
• Created: 2015-07-06T13:22:18.000Z (about 9 years ago)
• Default Branch: master
• Last Pushed: 2022-04-07T09:54:33.000Z (over 2 years ago)
• Last Synced: 2024-06-30T14:52:37.292Z (3 months ago)
• Language: R
• Size: 13.1 MB
• Stars: 17
• Watchers: 5
• Forks: 18
• Open Issues: 18
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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• awesome-riboseq - Code

README

        
Xtail

=========

Genome-wide assessment of differential translations with ribosome profiling data

# VERSION

1.1.5

# Authors

Zhengtao Xiao, Qin Zou, Yu Liu and Xuerui Yang

# DESCRIPTION

The purpose of this package is to identify the genes undergoing differential translation across two conditions with ribosome profiling data.

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# REQUIREMENTS

* R >= 3.2

* DESeq2

* Rcpp >= 0.10.1

* parallel 

# INSTALLATION

To install Xtail, please refer to INSTALL file in this directory. We also have prepared a docker image of xtail, please refer to this [page](https://hub.docker.com/r/yanglab/xtail).

# CONTENTS

The R install packages are located in the "releases" tag.

# DOCUMENTATION

To use Xtail, please refer to the instructions in xtail.pdf in this subdirectory inst/doc,

or type: vignette("xtail") at the R-prompt.

# LICENSE

Xtail is licensed under the GPL version 3 or any later version

For more information please contact  xzt13[at]tsinghua.org.cn and THUhry12[at]163.com