https://github.com/xryanglab/xtail
Genome-wide assessment of differential translations with ribosome profiling data
https://github.com/xryanglab/xtail
Last synced: 8 months ago
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Genome-wide assessment of differential translations with ribosome profiling data
- Host: GitHub
- URL: https://github.com/xryanglab/xtail
- Owner: xryanglab
- License: gpl-3.0
- Created: 2015-07-06T13:22:18.000Z (over 10 years ago)
- Default Branch: master
- Last Pushed: 2022-04-07T09:54:33.000Z (almost 4 years ago)
- Last Synced: 2024-08-05T15:04:04.427Z (over 1 year ago)
- Language: R
- Size: 13.1 MB
- Stars: 17
- Watchers: 5
- Forks: 18
- Open Issues: 18
-
Metadata Files:
- Readme: README.md
- License: LICENSE
Awesome Lists containing this project
- awesome-riboseq - Code
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README
Xtail
=========
Genome-wide assessment of differential translations with ribosome profiling data
# VERSION
1.2.0
# Authors
Zhengtao Xiao
# DESCRIPTION
The xtail package is designed to identify genes exhibiting differential translation
between two experimental conditions by simultaneously analyzing changes in RNA-seq
and ribo-seq data. The estimation of changes in read counts are performed
using the DESeq2 package.
# REQUIREMENTS
* R >= 3.2
* DESeq2
* Rcpp >= 0.10.1
* parallel
# INSTALLATION
Details of the installation process can be found in the INSTALL file located in the root directory of the package.
Additionally, a Docker image of xtail is available; please refer to this [page](https://hub.docker.com/r/yanglab/xtail) for more information.
# CONTENTS
The R install packages are located in the "releases" tag.
# DOCUMENTATION
To use Xtail, please refer to the instructions in xtail.pdf in this subdirectory inst/doc,
or type: vignette("xtail") at the R-prompt.
# LICENSE
Xtail is licensed under the GPL version 3 or any later version
For more information please contact zhengtao.xiao[at]xjtu.edu.cn