https://github.com/y9c/scmd-calmorph
Tool for quantify morphological trait of budding yeast (fork version maintained by Chang)
https://github.com/y9c/scmd-calmorph
cell traits yeast
Last synced: about 1 month ago
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Tool for quantify morphological trait of budding yeast (fork version maintained by Chang)
- Host: GitHub
- URL: https://github.com/y9c/scmd-calmorph
- Owner: y9c
- Created: 2016-03-17T13:55:15.000Z (over 10 years ago)
- Default Branch: master
- Last Pushed: 2022-02-08T17:22:40.000Z (over 4 years ago)
- Last Synced: 2025-03-02T13:51:06.972Z (over 1 year ago)
- Topics: cell, traits, yeast
- Language: Java
- Homepage:
- Size: 88.5 MB
- Stars: 2
- Watchers: 1
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
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README
# SCMDUtils
> fork version of CalMolph maintained by Chang
---
### How to build?
```bash
cd $PROJECT_PATH
make
```
### How to use?
```bash
cd $PROJECT_PATH
java -jar ./target/CalMolph-2.0.3.jar -i ./test/zzz -o ./test/out -x ./test/xml -v
```
> parameters
| name | description |
| ---- | --------------------------------------------- |
| i | input photo directory |
| o | output directory of the analysis results |
| x | output directory of the point coordinates |
| n | specify the strain name |
| s | specify the suffix of image file |
| a | actin mode, opt: [true / false], default true |
| d | DAPI mode, opt: [true / false], default true |
---
### Update
- change ant build to maven
- fix SJIS encoding to UTF-8
- replace log4j 1.x with 2.13
### TODO
- make the Japanese annotation in to English