https://github.com/yanndubs/mirnaseq-analysis
Analyze single-cell miRNA sequencing data from HL-60 cells along a 7-day time-course of ATRA treatment.
https://github.com/yanndubs/mirnaseq-analysis
atra-treatment bioinformatics mirna mirnaseq-analysis rna-seq
Last synced: 2 months ago
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Analyze single-cell miRNA sequencing data from HL-60 cells along a 7-day time-course of ATRA treatment.
- Host: GitHub
- URL: https://github.com/yanndubs/mirnaseq-analysis
- Owner: YannDubs
- Created: 2017-03-15T10:53:01.000Z (over 8 years ago)
- Default Branch: master
- Last Pushed: 2017-04-06T03:14:21.000Z (about 8 years ago)
- Last Synced: 2025-03-24T07:21:29.420Z (3 months ago)
- Topics: atra-treatment, bioinformatics, mirna, mirnaseq-analysis, rna-seq
- Language: R
- Homepage: https://yanndubs.github.io/miRNAseq-Analysis/
- Size: 16.1 MB
- Stars: 5
- Watchers: 1
- Forks: 2
- Open Issues: 0
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Metadata Files:
- Readme: README.md
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README
# miRNAseq Analysis
This project will analyze single-cell miRNA sequencing data from HL-60 cells— a promyeloblast cell-line which is commonly used as a differentiation model— along a 7-day time-course of ATRA treatment. The overall objective is to utilize next-generation sequencing data to investigate the role of miRNA in ATRA-induced differentiation. The hypothesis is that the HL-60 miRNA expression signatures will change as the cells differentiate relative to time.
## [Code and results](https://yanndubs.github.io/miRNAseq-Analysis/)
## [Poster](https://github.com/YannDubs/View-project-540/tree/master/zoo_crew_poster.png)