https://github.com/yuehhua/cdgrns.jl

Official Implementation of Context-Dependent Gene Regulatory Networks (CDGRNs)
https://github.com/yuehhua/cdgrns.jl

cdgrn gmm grn julia julialang unspliced-transcript

Last synced: 2 months ago
JSON representation

Official Implementation of Context-Dependent Gene Regulatory Networks (CDGRNs)

• Host: GitHub
• URL: https://github.com/yuehhua/cdgrns.jl
• Owner: yuehhua
• License: mit
• Created: 2021-02-12T17:48:52.000Z (almost 4 years ago)
• Default Branch: master
• Last Pushed: 2023-02-20T22:50:01.000Z (almost 2 years ago)
• Last Synced: 2024-10-15T16:43:43.542Z (2 months ago)
• Topics: cdgrn, gmm, grn, julia, julialang, unspliced-transcript
• Language: Julia
• Homepage:
• Size: 21.1 MB
• Stars: 5
• Watchers: 3
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

Awesome Lists containing this project

README

        
# CDGRNs.jl

[![Stable](https://img.shields.io/badge/docs-stable-blue.svg)](https://yuehhua.github.io/CDGRNs.jl/stable/)

[![Dev](https://img.shields.io/badge/docs-dev-blue.svg)](https://yuehhua.github.io/CDGRNs.jl/dev/)

[![Build Status](https://github.com/yuehhua/CDGRNs.jl/actions/workflows/test.yml/badge.svg?branch=main)](https://github.com/yuehhua/CDGRNs.jl/actions/workflows/test.yml?query=branch%3Amain)

[![Coverage](https://codecov.io/gh/yuehhua/CDGRNs.jl/branch/main/graph/badge.svg)](https://codecov.io/gh/yuehhua/CDGRNs.jl)

CDGRNs.jl provides implementation of Context-Dependent Gene Regulatory Networks (CDGRN) model in Julia. This package provides basic functionalities and examples are work in progress.

## Citation

```

@article{10.1093/bib/bbac633,

    author = {Tu, Yueh-Hua and Juan, Hsueh-Fen and Huang, Hsuan-Cheng},

    title = "{Context-dependent gene regulatory network reveals regulation dynamics and cell trajectories using unspliced transcripts}",

    journal = {Briefings in Bioinformatics},

    year = {2023},

    month = {01},

    issn = {1477-4054},

    doi = {10.1093/bib/bbac633},

    url = {https://doi.org/10.1093/bib/bbac633},

    note = {bbac633},

    eprint = {https://academic.oup.com/bib/advance-article-pdf/doi/10.1093/bib/bbac633/48757164/bbac633.pdf},

}

```