https://github.com/yzchen/magiq-combblas
https://github.com/yzchen/magiq-combblas
combblas magiq matrix-algebra rdf sparql
Last synced: 3 months ago
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- Host: GitHub
- URL: https://github.com/yzchen/magiq-combblas
- Owner: yzchen
- License: other
- Created: 2018-02-20T10:01:27.000Z (about 7 years ago)
- Default Branch: magiq
- Last Pushed: 2019-08-04T11:05:45.000Z (almost 6 years ago)
- Last Synced: 2025-01-15T07:15:38.336Z (4 months ago)
- Topics: combblas, magiq, matrix-algebra, rdf, sparql
- Language: C++
- Size: 55.2 MB
- Stars: 4
- Watchers: 4
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
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README
# MAGiQ(CombBLAS)
[Combinatorial BLAS](https://people.eecs.berkeley.edu/~aydin/CombBLAS/html/index.html)(version 1.6.1, Jan 2018)
## Prerequisites
- MPI (see first a few lines in CMakeLists.txt)
- cmake >= 3.0
- C++11/C++14
## Compile && Run
#### Compile
1. normal compilation
```
mkdir -p build
cd ../build && cmake .. && make -j
```
2. use `COMBBLAS_DEBUG` mode to enable combblas debug information output:
```
mkdir -p build
cd ../build && cmake -D COMBBLAS_DEBUG=ON .. && make -j
```
3. use `MAGIQ_DEBUG` mode to enable magiq debug information output:
```
mkdir -p build
cd ../build && cmake -D MAGIQ_DEBUG=ON .. && make -j
```
4. build on Shaheen
first load proper modules:
```
module swap PrgEnv-cray/6.0.4 PrgEnv-gnu
module load cray-mpich
```
change the first two line of `CMakeLists.txt`, make following changes :
```
-SET(CMAKE_CXX_COMPILER mpic++)
-SET(CMAKE_C_COMPILER mpicc)
+SET(CMAKE_CXX_COMPILER CC)
+SET(CMAKE_C_COMPILER cc)
```
then do as above three sections suggested, by setting compiler to `CC/cc` you can only run the executable file with `srun`.
#### Run
1. run(in `$MAGiQ_ROOT/build`) hard coded program:
```
mpirun -np 16 ./magiq_src/magiqScal ../data/paracoder_lubm1B.nt
```
2. run(in `$MAGiQ_ROOT/build`) sparql parser program:
```
mpirun -np 16 ./magiq_src/magiqParse ../data/paracoder_lubm1B.nt ../examples/queries/lubm/q7.txt 1
```
3. run on Shaheen
example job script on Shaheen:
```
#!/bin/bash
#SBATCH --account=k1210
#SBATCH --job-name=test
#SBATCH --output=otest
#SBATCH --error=etest
#SBATCH --nodes=1
#SBATCH --time=10:00
#SBATCH --hint=nomultithread
#SBATCH --ntasks-per-node=1
#SBATCH --ntasks=1
#SBATCH --exclusive
module swap PrgEnv-cray/6.0.4 PrgEnv-gnu
module load cray-mpich
cd /project/k1285/CombBLAS/
srun ./build/magiq_src/magiqParse ./examples/data/poster.nt ./examples/queries/poster/query.txt
```
## Project Structure
### docs
some documents about this project
### example
example graph data and query files
### external
all dependencies
### include
CombBLAS header files
### magiq_include
contains header file for magiq(CombBLAS) implementation
### magiq_src
contains src file for magiq(CombBLAS) implementation
- magiqScal.cpp
hard coded program for lubm queries
- magiqParse.cc
automatic query translation and execution
### src
CombBLAS source files
### build
not shown on github, all things are compiled here
## Proceeding && Link
EuroSys'19: [Matrix Algebra Framework for Portable, Scalable and Efficient Query Engines for RDF Graphs](https://dl.acm.org/citation.cfm?id=3303962)
Sparsql Parser Repository: [GitHub](https://github.com/fjamour/MAGiQ)