https://github.com/zachcp/jebl
A Java library for evolutionary biology and bioinformatics, including objects representing biomolecular sequences, multiple sequence alignments and phylogenetic trees.
https://github.com/zachcp/jebl
Last synced: 20 days ago
JSON representation
A Java library for evolutionary biology and bioinformatics, including objects representing biomolecular sequences, multiple sequence alignments and phylogenetic trees.
- Host: GitHub
- URL: https://github.com/zachcp/jebl
- Owner: zachcp
- License: lgpl-2.1
- Created: 2018-10-19T20:24:07.000Z (over 7 years ago)
- Default Branch: master
- Last Pushed: 2016-11-11T00:44:57.000Z (over 9 years ago)
- Last Synced: 2025-02-24T04:13:00.731Z (over 1 year ago)
- Language: Java
- Size: 2.93 MB
- Stars: 2
- Watchers: 1
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: Readme.md
- License: LICENSE.md
Awesome Lists containing this project
README
# Java Evolutionary Biology Library
A Java library for evolutionary biology and bioinformatics, including objects representing biomolecular sequences,
multiple sequence alignments and phylogenetic trees.
## Requirements
* Java Development Kit 1.6+
* Apache Ant
## Installation
Run the following command from within the jebl directory:
ant dist
The built *jebl.jar* library in the dist folder can then be included in your project.
### API Documentation
To produce the Javadoc in the *doc* directory run the following:
ant document
## Development
This project includes three components:
1. jebl
2. org.virion.jam
3. org.virion.jam.maconly
*org.virion.jam.maconly* that can only be built under Mac OS X. A pre-built version is located in the lib directory
so it can be included on the classpath for non-Macs. If anything is changed in this package then it has to be built separately
(see the -mac-only targets).
### Operating System
If you are using an IDE and not on a Mac then you will need to exclude org.virion.jam.maconly in order to compile the
project.
## Contributing
* Log issues in [Github issue tracker|https://github.com/Biomatters/JEBL/issues]
* Pull requests are welcome, we will try to review them in a timely manner