https://github.com/zachcp/plm-local

run protein language models locally
https://github.com/zachcp/plm-local

Last synced: 2 months ago
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run protein language models locally

• Host: GitHub
• URL: https://github.com/zachcp/plm-local
• Owner: zachcp
• Created: 2024-12-08T14:51:40.000Z (6 months ago)
• Default Branch: main
• Last Pushed: 2024-12-09T18:00:53.000Z (6 months ago)
• Last Synced: 2025-03-24T00:59:41.694Z (2 months ago)
• Language: Rust
• Size: 11.7 KB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: Readme.md

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README

        
# plm-local

Local-first protein languge models.  WIP.

```shell

# run AMPLIFY350M

cargo run --release \

  --features metal -- \

  --model-id 350M \

  --protein-string \

    MAFSAEDVLKEYDRRRRMEALLLSLYYPNDRKLLDYKEWSPPRVQVECPKAPVEWNNPPSEKGLIVGHFSGIKYKGEKAQASEVDVNKMCCWVSKFKDAMRRYQGIQTCKIPGKVLSDLDAKIKAYNLTVEGVEGFVRYSRVTKQHVAAFLKELRHSKQYENVNLIHYILTDKRVDIQHLEKDLVKDFKALVESAHRMRQGHMINVKYILYQLLKKHGHGPDGPDILTVKTGSKGVLYDDSFRKIYTDLGWKFTPL

# run AMPLIFY120M

cargo run --release \

  --features metal -- \

  --model-id 120M \

  --protein-string \

    MAFSAEDVLKEYDRRRRMEALLLSLYYPNDRKLLDYKEWSPPRVQVECPKAPVEWNNPPSEKGLIVGHFSGIKYKGEKAQASEVDVNKMCCWVSKFKDAMRRYQGIQTCKIPGKVLSDLDAKIKAYNLTVEGVEGFVRYSRVTKQHVAAFLKELRHSKQYENVNLIHYILTDKRVDIQHLEKDLVKDFKALVESAHRMRQGHMINVKYILYQLLKKHGHGPDGPDILTVKTGSKGVLYDDSFRKIYTDLGWKFTPL

```