https://github.com/zachcp/uparse_python
**deprecated** python package of the Uparse python scripts **deprecated**
https://github.com/zachcp/uparse_python
Last synced: 3 months ago
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**deprecated** python package of the Uparse python scripts **deprecated**
- Host: GitHub
- URL: https://github.com/zachcp/uparse_python
- Owner: zachcp
- Created: 2015-06-03T17:37:32.000Z (almost 10 years ago)
- Default Branch: master
- Last Pushed: 2015-06-18T19:59:06.000Z (almost 10 years ago)
- Last Synced: 2025-02-24T04:13:01.472Z (3 months ago)
- Language: Python
- Homepage:
- Size: 148 KB
- Stars: 1
- Watchers: 1
- Forks: 1
- Open Issues: 1
-
Metadata Files:
- Readme: Readme.md
Awesome Lists containing this project
README
##### Uparse python scripts packaged for ease of use
uparse/usearch comes with an optional set of [python scripts](http://drive5.com/python/).
This package combines these scripts and makes them available system wide, hopefully reducing filesystem clutter
and enhancing reproducibility.
[fasta_number.py](http://drive5.com/python/fasta_number_py.html)
```[python]
uparse_fasta_number.py --fasta fastafile --prefix "awesome_experiment" > fastafile
```
[fastq_strip_barcode_relabel_py](http://drive5.com/python/fastq_strip_barcode_relabel_py.html)
```[python]
uparse_fastq_strip_barcode_relabel_py --fastq fastqfile --primer "ACCTTAC" --barcodefilename barcodes.txt --labelprefix "my_label" > output
```
[faqual2fastq.py](http://drive5.com/python/faqual2fastq_py.html)
```[python]
uparse_faqual2fastq.py --fasta fastafile --qual qualfile > output
```
[uc2otutab.py](http://drive5.com/python/faqual2fastq_py.html)
```[python]
uparse_uc2otutab.py --ucfile ucfile > output
```