https://github.com/zhou-ran/scar

Spatially-resolved Chimeric AnalyzeR
https://github.com/zhou-ran/scar

cell-cell-interaction spatial-sequencing

Last synced: 20 days ago
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Spatially-resolved Chimeric AnalyzeR

• Host: GitHub
• URL: https://github.com/zhou-ran/scar
• Owner: zhou-ran
• Created: 2023-07-10T08:15:53.000Z (over 1 year ago)
• Default Branch: main
• Last Pushed: 2024-12-05T07:08:54.000Z (29 days ago)
• Last Synced: 2024-12-05T07:24:05.804Z (29 days ago)
• Topics: cell-cell-interaction, spatial-sequencing
• Language: R
• Homepage:
• Size: 51.8 KB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
# SCAR

SCAR (**S**patially-resolved **C**himeric **A**nalyze**R**) is a specialized package for analyzing spatial RNA-seq data derived from chimeric tumor models. Built on the [SeuratData](https://github.com/satijalab/seurat-data) framework, SCAR seamlessly integrates into the [Seurat](https://github.com/satijalab/seurat) ecosystem, enabling users to leverage its comprehensive analysis tools.

## Installation

```

install.package('devtools')

devtools::install_github('zhou-ran/SCAR')

```

How to use please refer to [document](https://github.com/zhou-ran/SCAR/document)

## Citation

If you use SCAPE in your publication, please cite SCAR by