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https://github.com/zoccoler/flood-napari

Last synced: 3 days ago
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Host: GitHub
URL: https://github.com/zoccoler/flood-napari
Owner: zoccoler
License: bsd-3-clause
Created: 2021-12-02T15:43:54.000Z (about 3 years ago)
Default Branch: main
Last Pushed: 2022-02-24T13:10:00.000Z (almost 3 years ago)
Last Synced: 2024-11-16T04:56:05.298Z (about 2 months ago)
Language: Python
Size: 1.94 MB
Stars: 0
Watchers: 1
Forks: 0
Open Issues: 0
Metadata Files:
- Readme: README.md
- License: LICENSE

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README

        # flood-napari

[![License](https://img.shields.io/pypi/l/flood-napari.svg?color=green)](https://github.com/zoccoler/flood-napari/raw/main/LICENSE)

[![PyPI](https://img.shields.io/pypi/v/flood-napari.svg?color=green)](https://pypi.org/project/flood-napari)

[![Python Version](https://img.shields.io/pypi/pyversions/flood-napari.svg?color=green)](https://python.org)

[![tests](https://github.com/zoccoler/flood-napari/workflows/tests/badge.svg)](https://github.com/zoccoler/flood-napari/actions)

[![codecov](https://codecov.io/gh/zoccoler/flood-napari/branch/main/graph/badge.svg)](https://codecov.io/gh/zoccoler/flood-napari)

[![napari hub](https://img.shields.io/endpoint?url=https://api.napari-hub.org/shields/flood-napari)](https://napari-hub.org/plugins/flood-napari)

### This project is discontinued. You can still install and use it, but it is no longer maintained nor supported.

A simple plugin to flood 8-bit 2D images by means of a big blue label.

Essentially, it creates a label by manual thresholding the image. It can be used as a visual feedback to probe background heterogeneities.

This plugin was created as result of a teachig material. Each of the 3 modules was implemented differently (check this [blog post](https://biapol.github.io/blog/marcelo_zoccoler/entry_user_interf3/) for more information about each implementation), but the result is similar.

![](https://github.com/zoccoler/flood-napari/raw/main/images/flood_napari_demo.gif)

----------------------------------

This [napari] plugin was generated with [Cookiecutter] using [@napari]'s [cookiecutter-napari-plugin] template.

## Installation

First install napari with:

    pip install napari[all]

Then, you can install `flood-napari` via [pip]:

    pip install flood-napari

To install latest development version :

    pip install git+https://github.com/zoccoler/flood-napari.git

## Contributing

Contributions are very welcome. Tests can be run with [tox], please ensure

the coverage at least stays the same before you submit a pull request.

## License

Distributed under the terms of the [BSD-3] license,

"flood-napari" is free and open source software

## Issues

If you encounter any problems, please [file an issue] along with a detailed description.

[napari]: https://github.com/napari/napari

[Cookiecutter]: https://github.com/audreyr/cookiecutter

[@napari]: https://github.com/napari

[MIT]: http://opensource.org/licenses/MIT

[BSD-3]: http://opensource.org/licenses/BSD-3-Clause

[GNU GPL v3.0]: http://www.gnu.org/licenses/gpl-3.0.txt

[GNU LGPL v3.0]: http://www.gnu.org/licenses/lgpl-3.0.txt

[Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0

[Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt

[cookiecutter-napari-plugin]: https://github.com/napari/cookiecutter-napari-plugin

[file an issue]: https://github.com/zoccoler/flood-napari/issues

[napari]: https://github.com/napari/napari

[tox]: https://tox.readthedocs.io/en/latest/

[pip]: https://pypi.org/project/pip/

[PyPI]: https://pypi.org/