https://github.com/zoccoler/napari-flim-phasor-plotter

https://github.com/zoccoler/napari-flim-phasor-plotter

Last synced: 4 months ago
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• Host: GitHub
• URL: https://github.com/zoccoler/napari-flim-phasor-plotter
• Owner: zoccoler
• License: bsd-3-clause
• Created: 2022-12-14T10:18:43.000Z (over 3 years ago)
• Default Branch: main
• Last Pushed: 2025-03-27T14:48:37.000Z (about 1 year ago)
• Last Synced: 2025-04-30T17:03:32.817Z (about 1 year ago)
• Language: Jupyter Notebook
• Size: 210 MB
• Stars: 10
• Watchers: 2
• Forks: 1
• Open Issues: 11
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

          
# napari-flim-phasor-plotter

[![License BSD-3](https://img.shields.io/pypi/l/napari-flim-phasor-plotter.svg?color=green)](https://github.com/zoccoler/napari-flim-phasor-plotter/raw/main/LICENSE)

[![PyPI](https://img.shields.io/pypi/v/napari-flim-phasor-plotter.svg?color=green)](https://pypi.org/project/napari-flim-phasor-plotter)

[![Python Version](https://img.shields.io/pypi/pyversions/napari-flim-phasor-plotter.svg?color=green)](https://python.org)

[![tests](https://github.com/zoccoler/napari-flim-phasor-plotter/workflows/tests/badge.svg)](https://github.com/zoccoler/napari-flim-phasor-plotter/actions)

[![codecov](https://codecov.io/gh/zoccoler/napari-flim-phasor-plotter/branch/main/graph/badge.svg)](https://codecov.io/gh/zoccoler/napari-flim-phasor-plotter)

[![napari hub](https://img.shields.io/endpoint?url=https://api.napari-hub.org/shields/napari-flim-phasor-plotter)](https://napari-hub.org/plugins/napari-flim-phasor-plotter)

[![DOI](https://zenodo.org/badge/578127094.svg)](https://zenodo.org/doi/10.5281/zenodo.12620955)

Napari-flim-phasor-plotter is a [napari](https://napari.org/stable/) plugin to interactively load and show raw fluorescence lifetime imaging microscopy (FLIM) single images and series and generate phasor plots. These are Fourier transforms of the decay data being visualized using the [napari-clusters-plotter](https://github.com/BiAPoL/napari-clusters-plotter) plotter, adapted to suit the FLIM context. This allows qualitative and quantitative downstream analysis of FLIM images.  

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## Quick demo

![](https://github.com/zoccoler/napari-flim-phasor-plotter/raw/main/images/napari_FLIM_phasor_calculator_Demo.gif)

## Documentation

Please check our [documentation](https://napari-flim-phasor-plotter.readthedocs.io/en/stable/) for more details on how to install and use this plugin.

## Contributing

Contributions are very welcome. Tests can be run with [tox], please ensure

the coverage at least stays the same before you submit a pull request.

## License

Distributed under the terms of the [BSD-3] license,

"napari-flim-phasor-plotter" is free and open source software. 

If you use this plugin in a publication, please cite us: https://doi.org/10.5281/zenodo.12620956

## Issues

If you encounter any problems, please [file an issue] along with a detailed description.

[napari]: https://github.com/napari/napari

[Cookiecutter]: https://github.com/audreyr/cookiecutter

[@napari]: https://github.com/napari

[MIT]: http://opensource.org/licenses/MIT

[BSD-3]: http://opensource.org/licenses/BSD-3-Clause

[GNU GPL v3.0]: http://www.gnu.org/licenses/gpl-3.0.txt

[GNU LGPL v3.0]: http://www.gnu.org/licenses/lgpl-3.0.txt

[Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0

[Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt

[cookiecutter-napari-plugin]: https://github.com/napari/cookiecutter-napari-plugin

[file an issue]: https://github.com/zoccoler/napari-flim-phasor-plotter/issues

[napari]: https://github.com/napari/napari

[tox]: https://tox.readthedocs.io/en/latest/

[pip]: https://pypi.org/project/pip/

[PyPI]: https://pypi.org/