https://github.com/zoj613/occuspytial

A package for fast bayesian analysis of single season spatial occupancy models.
https://github.com/zoj613/occuspytial

markov-chain-monte-carlo mcmc occupancy-detection occupancy-modeling spatial-statistics species-occupancy

Last synced: 27 days ago
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A package for fast bayesian analysis of single season spatial occupancy models.

• Host: GitHub
• URL: https://github.com/zoj613/occuspytial
• Owner: zoj613
• License: bsd-3-clause
• Created: 2018-11-09T12:18:42.000Z (almost 6 years ago)
• Default Branch: master
• Last Pushed: 2021-03-22T21:19:49.000Z (over 3 years ago)
• Last Synced: 2024-09-14T09:56:23.246Z (about 2 months ago)
• Topics: markov-chain-monte-carlo, mcmc, occupancy-detection, occupancy-modeling, spatial-statistics, species-occupancy
• Language: Python
• Homepage: https://occuspytial.readthedocs.io
• Size: 483 KB
• Stars: 2
• Watchers: 2
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# OccuSpytial

[![Documentation Status](https://readthedocs.org/projects/occuspytial/badge/?version=latest)](https://occuspytial.readthedocs.io/en/latest/?badge=latest)

[![codecov](https://codecov.io/gh/zoj613/OccuSpytial/branch/master/graph/badge.svg?style=shield)](https://codecov.io/gh/zoj613/OccuSpytial)

[![zoj613](https://circleci.com/gh/zoj613/OccuSpytial.svg?style=shield)](https://circleci.com/gh/zoj613/OccuSpytial)

![PyPI - Python Version](https://img.shields.io/pypi/pyversions/OccuSpytial)

![PyPI](https://img.shields.io/pypi/v/OccuSpytial)

![PyPI - License](https://img.shields.io/pypi/l/OccuSpytial)

A package for fast bayesian analysis of spatial occupancy models. OccuSpytial implements

several samplers for the single season site spatial occupancy model using the Intrinsic Conditional Autoregressive (ICAR) model for spatial random effects.

## Usage

For usage examples refer to the project's [documentation](https://occuspytial.readthedocs.io).

## Installation

The package can be installed using [pip](https://pip.pypa.io).

```shell

pip install occuspytial

```

Alternatively, it can be installed from source using [poetry](https://python-poetry.org)

```shell

git clone https://github.com/zoj613/OccuSpytial.git

cd OccuSpytial/

poetry install

```

Note that installing this way requires that `Cython` is installed for a successful build.

## Testing

To run tests after installation, the package `pytest` is required. Simply run

the following line from the terminal in this package's root directory.

```shell

python -m pytest

```

If all tests pass, then you're good to go.

## Licensing

OccuSpytial is free software made available under the BSD License. For details

see the [LICENSE](https://github.com/zoj613/OccuSpytial/blob/master/LICENSE) file.