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https://maraab23.github.io/ggseqplot/
R library for visualizing (social science) sequence data using ggplot2
https://maraab23.github.io/ggseqplot/
ggplot2 r r-package rstats sequence-analysis traminer visualization
Last synced: 2 days ago
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R library for visualizing (social science) sequence data using ggplot2
- Host: GitHub
- URL: https://maraab23.github.io/ggseqplot/
- Owner: maraab23
- License: gpl-3.0
- Created: 2022-03-28T09:11:43.000Z (over 2 years ago)
- Default Branch: main
- Last Pushed: 2024-10-31T14:02:58.000Z (16 days ago)
- Last Synced: 2024-11-08T08:41:20.063Z (8 days ago)
- Topics: ggplot2, r, r-package, rstats, sequence-analysis, traminer, visualization
- Language: R
- Homepage: https://maraab23.github.io/ggseqplot/
- Size: 32.9 MB
- Stars: 14
- Watchers: 4
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.Rmd
- Changelog: NEWS.md
- License: LICENSE.md
Awesome Lists containing this project
README
---
output: github_document
editor_options:
markdown:
wrap: 72
---
```{r, include = FALSE}
knitr::opts_chunk$set(
collapse = TRUE,
comment = "#>",
fig.path = "man/figures/README-",
out.width = "100%"
)
```
# ggseqplot: ggplotify sequence data plots 
[](https://cran.r-project.org/package=ggseqplot)
[](https://github.com/maraab23/ggseqplot/actions)
[](https://app.codecov.io/gh/maraab23/ggseqplot?branch=main)
[](https://cranlogs.r-pkg.org/badges/grand-total/ggseqplot)
[](https://app.codecov.io/gh/maraab23/ggseqplot)
The main goal of [`{ggseqplot}`](https://maraab23.github.io/ggseqplot/) is to
provide functions that reproduce the sequence plots from
[`{TraMineR}`](http://traminer.unige.ch){target="\_blank"}'s `seqplot`
using [`{ggplot2}`](https://ggplot2.tidyverse.org/){target="\_blank"}.
These plots are produced on the basis of state sequence objects defined with
`TraMineR::seqdef`. The package automates the reshaping and plotting of
sequence data. This library literally builds on the excellent work of the
[`{TraMineR}`](http://traminer.unige.ch){target="\_blank"} and
[`{ggplot2}`](https://ggplot2.tidyverse.org/){target="\_blank"}
developers and uses several of the their functions to produce
ggplot2-flavored figures.
Note, that this library was not written because I personally dislike the
plots produced by
[`{TraMineR}`](http://traminer.unige.ch){target="\_blank"}, but rather
because I am normally using
[`{ggplot2}`](https://ggplot2.tidyverse.org/){target="\_blank"} instead of
base R's `plot` environment for visualizing data.
[`{TraMineR}`](http://traminer.unige.ch){target="\_blank"} was developed before
[`{ggplot2}`](https://ggplot2.tidyverse.org/){target="\_blank"} was as popular
as it is today and back then many users were more familiar with coding base R
plots. To date, however, many researchers and students are more accustomed to
using [`{ggplot2}`](https://ggplot2.tidyverse.org/){target="\_blank"} and
prefer to draw on the related skills and experiences instead of learning
how to refine base R plots just for the single purpose of visualizing
sequence data.
[`{ggseqplot}`](https://maraab23.github.io/ggseqplot/) contains the
following functions:
- `ggseqdplot` (equivalent to `TraMineR::seqdplot`)
- `ggseqeplot` (equivalent to `TraMineRextras::seqplot.tentrop`)
- `ggseqmsplot` (equivalent to `TraMineR::seqmsplot`)
- `ggseqmtplot` (equivalent to `TraMineR::seqmtplot`)
- `ggstrqeplot` (based on transitions rates computed with `TraMineR::seqtrate`)
- `ggseqiplot` (equivalent to `TraMineR::seqIplot`)
- `ggseqfplot` (equivalent to `TraMineR::seqfplot`)
- `ggseqrplot` (equivalent to `TraMineR::seqrplot`)
- `ggseqrfplot` (equivalent to `TraMineRextras::seqplot.rf`)
If you have change requests or find errors, [create an
issue](https://github.com/maraab23/ggseqplot/issues/new) on github or
send me an
[email](mailto:[email protected]?subject=ggseqplot%3A%20feature%20request).
A complementing [vignette](https://maraab23.github.io/ggseqplot/articles/ggseqplot.html) outlines how [`{ggseqplot}`](https://maraab23.github.io/ggseqplot/) reshapes sequence data
generated with [`{TraMineR}`](http://traminer.unige.ch){target="\_blank"} functions to visualize them using
[`{ggplot2}`](https://ggplot2.tidyverse.org/){target="\_blank"}. Moreover, it
illustrates how to adjust the baseline output using familiar
[`{ggplot2}`](https://ggplot2.tidyverse.org/){target="\_blank"}
functions (and add-ons).
## Installation
You can install the CRAN version of [`{ggseqplot}`](https://maraab23.github.io/ggseqplot/) by typing:
``` r
install.packages("ggseqplot")
```
The development version can be installed with:
``` r
devtools::install_github("maraab23/ggseqplot")
```
## Acknowledgements
I would like to thank Gilbert Ritschard, Tim Liao, and Emanuela Struffolino for
their comments on earlier versions of this library.