https://sydneybiox.github.io/CiteFuse/

CiteFuse:
https://sydneybiox.github.io/CiteFuse/

bioinformatics r single-cell

Last synced: about 1 month ago
JSON representation

CiteFuse:

• Host: GitHub
• URL: https://sydneybiox.github.io/CiteFuse/
• Owner: SydneyBioX
• Created: 2019-11-25T07:37:15.000Z (about 5 years ago)
• Default Branch: master
• Last Pushed: 2023-02-07T04:36:26.000Z (almost 2 years ago)
• Last Synced: 2024-08-01T20:35:09.592Z (4 months ago)
• Topics: bioinformatics, r, single-cell
• Language: R
• Homepage: https://sydneybiox.github.io/CiteFuse/index.html
• Size: 105 MB
• Stars: 26
• Watchers: 12
• Forks: 5
• Open Issues: 2
• Metadata Files:
  • Readme: README.md

Awesome Lists containing this project

• awesome-multi-omics - CiteFuse - Kim - CITE-seq data analysis [paper](https://doi.org/10.1093/bioinformatics/btaa282) (Software packages and methods / Single cell multi-omics)

README

        
# CiteFuse

CiteFuse is a streamlined package consisting of a suite of tools for pre-processing, modality integration, clustering, differential RNA and ADT expression analysis, ADT evaluation, ligand-receptor interaction analysis, and interactive web-based visualization of CITE-seq data

## Installation

Install CiteFuse via Bioconductor 

```r

library(BiocManager)

BiocManager::install("CiteFuse")

```

Install github version CiteFuse

```r

BiocManager::install("SydneyBioX/CiteFuse")

```

## Vignette

You can find the vignette at our website: https://sydneybiox.github.io/CiteFuse/articles/CiteFuse.html.

## CiteFuse overview



## Citation



Hani Jieun Kim, Yingxin Lin, Thomas A Geddes, Jean Yee Hwa Yang, Pengyi Yang, CiteFuse enables multi-modal analysis of CITE-seq data, _Bioinformatics_, Volume 36, Issue 14, 15 July 2020, Pages 4137–4143, [https://doi.org/10.1093/bioinformatics/btaa282](https://doi.org/10.1093/bioinformatics/btaa282)